Parental gene:

TPGS2, ENSSSCG00000026953

Aliases:None
Description:tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:24561]
Organism:Pig (Sus scrofa)
Coordinates:6:113245004..113290173(-)


>ENSSSCG00000026953
ATGATTTCTTCATGGGAACAAAAAAATAACTGCCTTCTGCCTGAGGATCTGAAGAACTTTTACCTGATGACAAATGGCTT
CCACATGACATGGAGTGTGAAGCTGGATGAGCATACCATTCCACTGGGCAGCATGGCAATTAACAGCATCTCAAAACTGA
CTCAACTCAACCAGTCTTCCATGTACTCACTTCCTAATGCACCAACTCTGGCAGACCTGGAGGACGATACACAAGAAGGT
AACTGGACCGGTGAGAACCAGCCAGAGAAGCCTCACTTTGATTCTCGCAGTGTGATATTTGAACTGGATCCTTGCAATGG
GAATGGGAAGGTTTGCCTTGTCTACAAAAGAGGGAAACCAGCATTAGCACAAGACTCTGAGATCTGGTTCCTGGACAGAG
CATTATACTGGCATTTTCTCACAGATACCTTTACTGCCTATTATCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGG
CAGTATGCCTTCACCAGCTATGGCATTAGCCCCCAGGCCAAGCAATGGTTCAACATGTATAAACCCATCACCTACAACAC
AAACCTACTCACAGAAGAGACTGACTCCTTTGTGAACAAGCTGGATCCTAGCAAAGTGTTCAAGAGCAAGAACAAGACCT
TAATCCCAAAAAAGAAAGGGCCTCCTCAACCTGCAGGTGGCCAGAAAGGGCCCTCAGGTCCTCCTTCCACCTCTAAATCC
TCCTCTGGCTCTGGAAACCCTGTCCGGAAATGA

Library Parental gene expression (RPM)
SRP014902_placenta 3 .98 RPM
SRP014902_testis 18 .67 RPM
SRP018288_heart 18 .91 RPM
SRP018288_kidney 13 .20 RPM
SRP018288_liver 3 .68 RPM
SRP018288_lung 18 .02 RPM
SRP018856_adipose 31 .17 RPM
SRP035408_brain 55 .90 RPM
SRP035408_liver 5 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017766 ortholog_one2one 3 retrogenes
retro_cfam_355, retro_cfam_457, retro_cfam_626,
Choloepus hoffmanni ENSCHOG00000007960 ortholog_one2one 1 retrogene
retro_chof_1642,
Erinaceus europaeus ENSEEUG00000005257 ortholog_one2one 3 retrogenes
retro_eeur_208, retro_eeur_324, retro_eeur_516,
Myotis lucifugus ENSMLUG00000001739 ortholog_one2one 1 retrogene
retro_mluc_1194,
Mustela putorius furo ENSMPUG00000001097 ortholog_one2one 2 retrogenes
retro_mputfur_1622, retro_mputfur_507,
Mus musculus ENSMUSG00000024269 ortholog_one2one 1 retrogene
retro_mmus_2648,
Otolemur garnettii ENSOGAG00000008218 ortholog_one2one 1 retrogene
retro_ogar_686,
Rattus norvegicus ENSRNOG00000014957 ortholog_one2one 1 retrogene
retro_rnor_2961,
Tarsius syrichta ENSTSYG00000005299 ortholog_one2one 2 retrogenes
retro_tsyr_1161, retro_tsyr_512,
Tursiops truncatus ENSTTRG00000007153 ortholog_one2one 1 retrogene
retro_ttru_1112,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_590 76.69 52.80
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Download FASTA sequences of all ENSSSCG00000026953 retrocopies