RetrogeneDB ID: retro_meug_917

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold230816:1367..2047(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000015381
• Aliases: None
• Description: None

Sequence

>retro_meug_917
ATTGGGATTATTGGTGGAACTGGTCTGGATGATCCTGAAATTGTAGAAGGAAGAATTGAAAAATATGTTGACACACCATA
TGGCAAGCCGTCAGATGCCTTGATTTTGGGGAAGATTAAAAATGTTGACTGTGTCCTGCTTGCAAGACATGGAAGGCAGC
ATACCATCATGCCTTCAAATATCAACTTCCAAGCAAACATTTGGGCCTTAAAGGAGGAGGGCTGCACTCACATTATAGTG
ACTACTGCTTGTGGCTCTTTAAGGGAAGAAATTCAGCCTGGAGACATAGTCATAATTGATCAGTTTATTGACGGGACAAC
CAAAAGACATCAAACCTTCTATGATGGAAGCCATGCCTGCTCTTCAGGAGTGTGTCACATTCCAATGGCTGAGCCATTTT
GCTCCAAAACCAGAGAGGTTCTCATAGAGACTGCTAAGAAACTTGGGCTCAAGTGCCACTCAAAGGGAACAATGGTAACC
ATGGAGGGACCCCGTTTCATTTCAAGGGCAGAAATCCTGATGTTCCGTGTTTGGGGAGCAGATCTGATCAACATGACCAC
AGTTCCTGAGGTGGTGCTTGCCAGAGAAGCTGGAATTTGCTATGCAACCATTGCTATGGCGACGGATACAACTGCTGGAA
AGAGCATGAGGAGGCGGTTTCAGTTGATAATATCATGAAG

Alignment

ORF - retro_meug_917 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.18 %
• Parental protein coverage: 83.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IGIIGGTGLDDPEILEGRTEKYVDTPYGKPSDALILGKIKNVDCVLLARHGRQHTIMPSNINFQANIWAL
          IGIIGGTGLDDPEI.EGR.EKYVDTPYGKPSDALILGKIKNVDCVLLARHGRQHTIMPSNINFQANIWAL
Retrocopy IGIIGGTGLDDPEIVEGRIEKYVDTPYGKPSDALILGKIKNVDCVLLARHGRQHTIMPSNINFQANIWAL

Parental  KEEGCTHIIVTTACGSLREEIQPGDIVIIDQFIDRTTKRHQTFYDGSHACSSGVCHIPMAEPFCSKTREV
          KEEGCTHIIVTTACGSLREEIQPGDIVIIDQFID.TTKRHQTFYDGSHACSSGVCHIPMAEPFCSKTREV
Retrocopy KEEGCTHIIVTTACGSLREEIQPGDIVIIDQFIDGTTKRHQTFYDGSHACSSGVCHIPMAEPFCSKTREV

Parental  LIETAKKLGLKCPSKGTMVTVEGPRFSSRAESLMFRVWGADLINMTTVPEVVLAREAGICYATIAMATE-
          LIETAKKLGLKC.SKGTMVT.EGPRF.SRAE.LMFRVWGADLINMTTVPEVVLAREAGICYATIAMAT..
Retrocopy LIETAKKLGLKCHSKGTMVTMEGPRFISRAEILMFRVWGADLINMTTVPEVVLAREAGICYATIAMATD<

Parental  YDCWKEHEEAVSVDNVMK
          Y.CWKEHEEAVSVDN.MK
Retrocopy YNCWKEHEEAVSVDNIMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_917 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_917 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000025929	1 retrocopy	retro_btau_1049,
Choloepus hoffmanni	ENSCHOG00000002224	1 retrocopy	retro_chof_772,
Callithrix jacchus	ENSCJAG00000008021	2 retrocopies	retro_cjac_187, retro_cjac_950,
Cavia porcellus	ENSCPOG00000000825	1 retrocopy	retro_cpor_375,
Dasypus novemcinctus	ENSDNOG00000008670	1 retrocopy	retro_dnov_1572,
Echinops telfairi	ENSETEG00000013214	1 retrocopy	retro_etel_588,
Macropus eugenii	ENSMEUG00000015381	2 retrocopies	retro_meug_807, retro_meug_917 ,
Microcebus murinus	ENSMICG00000015072	1 retrocopy	retro_mmur_927,
Macaca mulatta	ENSMMUG00000001137	1 retrocopy	retro_mmul_1549,
Ornithorhynchus anatinus	ENSOANG00000013963	1 retrocopy	retro_oana_38,
Oryctolagus cuniculus	ENSOCUG00000012289	2 retrocopies	retro_ocun_1355, retro_ocun_341,
Otolemur garnettii	ENSOGAG00000007889	1 retrocopy	retro_ogar_3285,
Ochotona princeps	ENSOPRG00000001259	1 retrocopy	retro_opri_792,