RetrogeneDB ID: retro_mmur_927

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_132789:27..795(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTAP
• Ensembl ID: ENSMICG00000015072
• Aliases: None
• Description: methylthioadenosine phosphorylase [Source:HGNC Symbol;Acc:7413]

Sequence

>retro_mmur_927
GGAATAACAGGTGGAACAGGCCTGGATGATCCAGAAATTCTAGAAGGAAGAACTGAGAAATATGTGGATACTCCATTTGG
CAAGCCATCTGATGCCTTAATTTGGGGGAAGATAAAAAATGTCAATCGTATCCCCCTTGCAAAGCACAGGTGGCAGCCCA
CCATTGTGCCTTCCAAAATCAACCACCAGGTGAACATCTGGGCTTAGAAGGAAGAGGGTTGTACACATGTCATAGTGACC
ATGGCCTGCAGCTTCCTGAGGGAGGAGATTCAGCCTGGTGATGTGGTTATTACCCATCAATTCATTGACAGGGCCACCAT
GAGGCCTCAGACCTTCTCTGATGGAAGTCATTCCTGTGCTAGAGGAGTGTGCCATGTTCCCAGGGCTGAGCCATTTAGCC
CCAAAATGAGAGAGGTTCTCATCGAGACTGCTAAGAAGCCAGGACTCCAGTGCCACTCAAAGAGGACAATAGTCACAATT
GAAAGACCTTGTTTTAGCTTCCGGGCAGGAAGCTTCACGTTTTGCATCTGGGGGGCAGATGTCATCAACATGACCACAGT
TCCAGAGGTGGTTCTTGCTGAGGAGACAGGAATCTGCTACGCAAGTATCGCCATTGCAACAGATTACGATTGCTGGAAGG
AGCACGAGGAAGAAGTTTCAGTGGCCCGGGTCTTAAAGACCCTTAAAGAAAATGCCGAGAAAGCCAAAAGTTTACTTCTG
ACTACCAAACCTCAGATAGGGTCCATGGAATGGTCAGAAACCTTCCAT

Alignment

ORF - retro_mmur_927 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.25 %
• Parental protein coverage: 94.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GIIGGTGLDDPEILEARTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIVPSKVNYQANIWALK
          GI.GGTGLDDPEILE.RTEKYVDTPFGKPSDALI.GKIKNV....LA.H..Q.TIVPSK.N.Q.NIWA.K
Retrocopy GITGGTGLDDPEILEGRTEKYVDTPFGKPSDALIWGKIKNVNRIPLAKHRWQPTIVPSKINHQVNIWA*K

Parental  EEGCTHVIVTTACGSLREEIQPGDMVIIDQFIDRTAMRPQSFYDGTHACARGVCHIPMAEPFCPKTREVL
          EEGCTHVIVT.AC..LREEIQPGD.VI..QFIDR..MRPQ.F.DG.H.CARGVCH.P.AEPF.PK.REVL
Retrocopy EEGCTHVIVTMACSFLREEIQPGDVVITHQFIDRATMRPQTFSDGSHSCARGVCHVPRAEPFSPKMREVL

Parental  IETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRAWGADVINMTTVPEVVLAKEAGICYASIAIATDYD
          IETAKK.GL.CHSK.T.VTIE.P.FS.RA.SF.F..WGADVINMTTVPEVVLA.E.GICYASIAIATDYD
Retrocopy IETAKKPGLQCHSKRTIVTIERPCFSFRAGSFTFCIWGADVINMTTVPEVVLAEETGICYASIAIATDYD

Parental  CWKEHEEEVSVDRVLKTLKENANKAKSLLLTTIPQIGSMEWSETLH
          CWKEHEEEVSV.RVLKTLKENA.KAKSLLLTT.PQIGSMEWSET.H
Retrocopy CWKEHEEEVSVARVLKTLKENAEKAKSLLLTTKPQIGSMEWSETFH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_927 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_927 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002224	1 retrocopy	retro_chof_772,
Callithrix jacchus	ENSCJAG00000008021	2 retrocopies	retro_cjac_187, retro_cjac_950,
Cavia porcellus	ENSCPOG00000000825	1 retrocopy	retro_cpor_375,
Dasypus novemcinctus	ENSDNOG00000008670	1 retrocopy	retro_dnov_1572,
Echinops telfairi	ENSETEG00000013214	1 retrocopy	retro_etel_588,
Macropus eugenii	ENSMEUG00000015381	2 retrocopies	retro_meug_807, retro_meug_917,
Microcebus murinus	ENSMICG00000015072	1 retrocopy	retro_mmur_927 ,
Macaca mulatta	ENSMMUG00000001137	1 retrocopy	retro_mmul_1549,
Ornithorhynchus anatinus	ENSOANG00000013963	1 retrocopy	retro_oana_38,
Oryctolagus cuniculus	ENSOCUG00000012289	2 retrocopies	retro_ocun_1355, retro_ocun_341,
Otolemur garnettii	ENSOGAG00000007889	1 retrocopy	retro_ogar_3285,
Ochotona princeps	ENSOPRG00000001259	1 retrocopy	retro_opri_792,