pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_mdom_1127 details

RetrogeneDB ID:

retro_mdom_1127

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:3:182242718..182243129(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SPCS2
Ensembl ID:ENSMODG00000007130
Aliases:None
Description:signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28962]


Retrocopy-Parental alignment summary:






>retro_mdom_1127
GTCTCCTGTTTCTTCACCATGGTGGCTTTGGTCTGGGACCACCTGCACCCCTTGCCATCATCCACACCAGTCCTTGTCTT
ATGTGTCATAAATGATTTCATCATGATGGGGATCCTGACCATCTACACTTCATATAAAGAGAAAAGAATTTTCCTTGTAG
AGCAAAGAAAATATCCATCAGGAATGGATTCTGATTATGTTTGGCAACTCTGTTCCAGTCTTAAATGATTTGATGACAAG
TACATGCTGCAGGTAACTTTCACCACCAGGATAACTAAGAAGCAGAAGGAAGCAGAGTTTACTGAGATAATGGCTAAGTT
TTTCAACATCAGTGGGATAATGCTCATGGAGGCCCCAGAGACTGGGGACTCCAAGCTCCAGGACAGCCTGGCCACTGAAA
GGAAAACGAAA

ORF - retro_mdom_1127 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.07 %
Parental protein coverage: 60.09 %
Number of stop codons detected: 1
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalISCFFAVVALIWDYLHPFPASKPVLALCVISYFIMMGILTIYTSYKEKSIFLVAHRKDPSGMDPDDVWQL
.SCFF..VAL.WD.LHP.P.S.PVL.LCVI..FIMMGILTIYTSYKEK.IFLV..RK.PSGMD.D.VWQL
RetrocopyVSCFFTMVALVWDHLHPLPSSTPVLVLCVINDFIMMGILTIYTSYKEKRIFLVEQRKYPSGMDSDYVWQL
ParentalSSSLKRFDDKYTLKLTFISGKTKQQREAEFTKSIAKFFDNSGMLVMEAYEPEISKLHDSLATERKTK
.SSLK.FDDKY.L..TF....TK.Q.EAEFT...AKFF..SG...MEA.E...SKL.DSLATERKTK
RetrocopyCSSLK*FDDKYMLQVTFTTRITKKQKEAEFTEIMAKFFNISGIMLMEAPETGDSKLQDSLATERKTK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM

ChIP-Seq - click to see more details

Monodelphis domestica was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mdom_1127 retrocopy.

TSS - click to see more details

Monodelphis domestica was not studied using FANTOM5 data.

Lab - click to see more details

retro_mdom_1127 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000171271 retrocopy
retro_amel_1372,
Choloepus hoffmanni ENSCHOG000000029743 retrocopies
retro_chof_1392, retro_chof_1588, retro_chof_2300,
Callithrix jacchus ENSCJAG000000155762 retrocopies
retro_cjac_1500, retro_cjac_1929,
Cavia porcellus ENSCPOG000000072732 retrocopies
retro_cpor_438, retro_cpor_578,
Dipodomys ordii ENSDORG000000096791 retrocopy
retro_dord_423,
Homo sapiens ENSG000001183634 retrocopies
retro_hsap_1488, retro_hsap_3137, retro_hsap_360, retro_hsap_723,
Gorilla gorilla ENSGGOG000000145003 retrocopies
retro_ggor_1141, retro_ggor_372, retro_ggor_610,
Microcebus murinus ENSMICG000000111532 retrocopies
retro_mmur_1566, retro_mmur_656,
Macaca mulatta ENSMMUG000000106851 retrocopy
retro_mmul_26,
Monodelphis domestica ENSMODG00000007130 2 retrocopies
retro_mdom_1127 , retro_mdom_1454,
Mus musculus ENSMUSG000000352271 retrocopy
retro_mmus_2088,
Nomascus leucogenys ENSNLEG000000169492 retrocopies
retro_nleu_1710, retro_nleu_470,
Otolemur garnettii ENSOGAG000000156211 retrocopy
retro_ogar_2649,
Ochotona princeps ENSOPRG000000144592 retrocopies
retro_opri_266, retro_opri_948,
Pongo abelii ENSPPYG000000036824 retrocopies
retro_pabe_1237, retro_pabe_2619, retro_pabe_2817, retro_pabe_625,
Pan troglodytes ENSPTRG000000040731 retrocopy
retro_ptro_1007,
Rattus norvegicus ENSRNOG000000181642 retrocopies
retro_rnor_2078, retro_rnor_2168,
Sarcophilus harrisii ENSSHAG000000053891 retrocopy
retro_shar_787,
Sus scrofa ENSSSCG000000148501 retrocopy
retro_sscr_648,
Ictidomys tridecemlineatus ENSSTOG000000126472 retrocopies
retro_itri_1283, retro_itri_1584,
Tursiops truncatus ENSTTRG000000058303 retrocopies
retro_ttru_1478, retro_ttru_1496, retro_ttru_1867,


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