Parental gene:

SPCS2, ENSCPOG00000007273

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_103:693876..713656(-)


>ENSCPOG00000007273
ATGGCGGCGGCAGCGGCCCTGGGCGGGAGAAGCGGTGGTGGCGGAGGCAGTAGTGGGGCTGGTTGTGGCCCTAGTGGCGG
GACAAGCGGCTGCCGAAGTGGCTTGTTGGATAAGTGGAAGATTGATGATAAGCCTGTAAAAATTGACAAATGGGATGGAT
CTGCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAGGTACTTCTGGAAAAGTACAAATACGTGGAGAATTTTGGTCTA
ATTGACGGTCGCCTCACCATCTGTACCATCTCCTGTTTCTTTGCCATAGTGGCTTTAATTTGGGATTATATGCACCCCTT
TCCGGAGTCTAAGCCAGTTTTGGCTTTGTGTGTTGTATCCTATTTTGTGATGATGGGGATTCTGACCATTTATACCTCAT
ATAAGGAGAAGAGCATCTTTCTTGTGGCTCACAGGAAAGATCCTACAGGCATGGATCCGGATGATATTTGGCAACTGTCC
TCCAGTCTCAAAAGGTTTGATGACAAATACACCCTGAAGCTGACTTTCATCAGTGGGAGAACAAAGCAGCAGCGGGAAGC
CGAGTTCACCAAGTCCATTGCTAAATTCTTTGACCATAGCGGGACACTGGTCATGGATGCATATGAACCTGAAATATCCA
GGCTCCATGACAGCCTTGCTACAGAAAGAAAAGCAAAA

Library Parental gene expression (RPM)
SRP017611_brain 23 .41 RPM
SRP017611_kidney 29 .73 RPM
SRP017611_liver 45 .57 RPM
SRP040447_lung 37 .48 RPM
SRP040447_skeletal_muscle 15 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017127 ortholog_one2one 1 retrogene
retro_amel_1372,
Choloepus hoffmanni ENSCHOG00000002974 ortholog_one2one 3 retrogenes
retro_chof_1392, retro_chof_1588, retro_chof_2300,
Callithrix jacchus ENSCJAG00000015576 ortholog_one2one 2 retrogenes
retro_cjac_1500, retro_cjac_1929,
Dipodomys ordii ENSDORG00000009679 ortholog_one2one 1 retrogene
retro_dord_423,
Homo sapiens ENSG00000118363 ortholog_one2one 4 retrogenes
retro_hsap_1488, retro_hsap_3137, retro_hsap_360, retro_hsap_723,
Gorilla gorilla ENSGGOG00000014500 ortholog_one2many 3 retrogenes
retro_ggor_1141, retro_ggor_372, retro_ggor_610,
Microcebus murinus ENSMICG00000011153 ortholog_one2one 2 retrogenes
retro_mmur_1566, retro_mmur_656,
Macaca mulatta ENSMMUG00000010685 ortholog_one2many 1 retrogene
retro_mmul_26,
Monodelphis domestica ENSMODG00000007130 ortholog_one2one 2 retrogenes
retro_mdom_1127, retro_mdom_1454,
Mus musculus ENSMUSG00000035227 ortholog_one2one 1 retrogene
retro_mmus_2088,
Nomascus leucogenys ENSNLEG00000016949 ortholog_one2one 2 retrogenes
retro_nleu_1710, retro_nleu_470,
Otolemur garnettii ENSOGAG00000015621 ortholog_one2one 1 retrogene
retro_ogar_2649,
Ochotona princeps ENSOPRG00000014459 ortholog_one2many 2 retrogenes
retro_opri_266, retro_opri_948,
Pongo abelii ENSPPYG00000003682 ortholog_one2one 4 retrogenes
retro_pabe_1237, retro_pabe_2619, retro_pabe_2817, retro_pabe_625,
Pan troglodytes ENSPTRG00000004073 ortholog_one2one 1 retrogene
retro_ptro_1007,
Rattus norvegicus ENSRNOG00000018164 ortholog_one2one 2 retrogenes
retro_rnor_2078, retro_rnor_2168,
Sarcophilus harrisii ENSSHAG00000005389 ortholog_one2one 1 retrogene
retro_shar_787,
Sus scrofa ENSSSCG00000014850 ortholog_one2one 1 retrogene
retro_sscr_648,
Ictidomys tridecemlineatus ENSSTOG00000012647 ortholog_one2one 2 retrogenes
retro_itri_1283, retro_itri_1584,
Tursiops truncatus ENSTTRG00000005830 ortholog_one2one 3 retrogenes
retro_ttru_1478, retro_ttru_1496, retro_ttru_1867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_438 55.13 68.14
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2. retro_cpor_578 74.12 100.00
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Download FASTA sequences of all ENSCPOG00000007273 retrocopies