RetrogeneDB ID: | retro_ggor_1813 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 2b:111659682..111660067(-) | ||
| Located in intron of: | ENSGGOG00000008876 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSGGOG00000004759 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ggor_1813
GGAGCCATGAGACAACAGAATATCAAAACTGGTGAGGGCTTCCTGTTGGTCTTTTGAGTCACAGGTCAAGGCAGTTTTGG
AAAAAATCTATACATTTCAAAGACAGATTCTCAGAGTGAAAGATTATGATGAGTTTCCAATGATTTTATTTGGCAATAAA
GCAGATCTGGATCATTAAAGACAAGTAACACAGGAAGGACACAGTTAGTACGGCAACTTAAGGCAGCATACCCAGAAGGC
ATTAGCAAAGATTAGAATGAATGTAGATTAAGCTTTCCATTAACTTGTCCAAGTTATAAGGAAATTTCAAGAGCAGTAAC
TTCGTTCTTCACCAGAATCGACATGGAAAGAAAAAGACAAGAAAGGCTGCTACTGTGTCATTTTC
ORF - retro_ggor_1813 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.76 % |
| Parental protein coverage: | 76.33 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | GAMREQYMRTGEGFLLVFSVTDRGSF-EEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ- |
| GAMR.Q...TGEGFLLVF.VT..GSF.E.IY.FQRQILRVKD.DEFPMIL.GNKADLDH.RQVTQ.EG.. | |
| Retrocopy | GAMRQQNIKTGEGFLLVF*VTGQGSF>EKIYTFQRQILRVKDYDEFPMILFGNKADLDH*RQVTQ-EGH< |
| Parental | QLARQLKVTYME-ASAKIRMNVDQAFHELVRVIRKFQEQECPPSPEPTRKEKDKKGCHCVIF |
| QL.RQLK..Y.E.A.AKIRMNVD.AFH.LV.VIRKFQEQ....SPE.T.KEKDKKGC.CVIF | |
| Retrocopy | QLVRQLKAAYPE>ALAKIRMNVD*AFH*LVQVIRKFQEQ*LRSSPESTWKEKDKKGCYCVIF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .45 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 3 .94 RPM |
| SRP007412_heart | 0 .00 RPM | 2 .28 RPM |
| SRP007412_kidney | 0 .00 RPM | 9 .28 RPM |
| SRP007412_liver | 0 .00 RPM | 6 .38 RPM |
| SRP007412_testis | 0 .00 RPM | 10 .05 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1813 was not experimentally validated.