RetrogeneDB ID: | retro_dnov_1779 | ||
Retrocopy location | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_2969:75833..76280(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RRAS2 | ||
| Ensembl ID: | ENSDNOG00000011828 | ||
| Aliases: | None | ||
| Description: | related RAS viral (r-ras) oncogene homolog 2 [Source:HGNC Symbol;Acc:17271] |
Retrocopy-Parental alignment summary:
>retro_dnov_1779
AATCCAACCACTGAAGATTCCTATACAAAGCAGTGTGTCATAGACGACAGAGCAGCCCGGCTAGATATTCTGGATACAGC
AAGACAAGAAGAGTTTGGAGCTGTGCAAGAACAGGATGTGAGGACTGGCAAGGGTTTCCTGTTGGTCTTTGCAGTCACAG
ATAGAGACAGTTTTGAGGAAATGTGTAAGTTTCAAAGACAGGTTCTCAGGGTAAAGGACTGTGATGAATTTCTGTTGATT
TTAATTGGTAACAAAGCAGATCTAGCTCATCAGAGACAAGTAGCACAGAAGAAAGGATAGCGGTTAGGGCGGCACCTTAA
GGTACCATCCATGGGGGCCTCCGCAAAGATTAGGATGAATGTAAATGAAGCTTTCCAGGAACTTGTTCAGGTTGTAGAGA
AATGTCCTCCCTCACCAGAACCAACAGGGAAAGAAATACACAAGAAA
ORF - retro_dnov_1779 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.09 % |
| Parental protein coverage: | 73.27 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DPTIEDSYTKLCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSWEDIYKL-RQILR |
| .PT.EDSYTK.CVIDDRAARLDILDTA.QEEFGA..EQ..RTG.GFLLVF.VTDR.S.E...K..RQ.LR | |
| Retrocopy | NPTTEDSYTKQCVIDDRAARLDILDTARQEEFGAVQEQDVRTGKGFLLVFAVTDRDSFEEMCKFQRQVLR |
| Parental | VRNPDEFPMMLIGNKADVDHQRRVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQEC |
| V...DEF...LIGNKAD..HQR.V.Q..G..L.R.LKV..M.ASAKIRMNV..AF.ELV.V..K...... | |
| Retrocopy | VKDCDEFLLILIGNKADLAHQRQVAQKKG*RLGRHLKVPSMGASAKIRMNVNEAFQELVQVVEKCPPSPE |
| Parental | PPSPEPTRK |
| P...E...K | |
| Retrocopy | PTGKEIHKK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 4 .47 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 4 .81 RPM |
| SRP012922_heart | 0 .00 RPM | 2 .32 RPM |
| SRP012922_kidney | 0 .00 RPM | 4 .65 RPM |
| SRP012922_liver | 0 .00 RPM | 3 .41 RPM |
| SRP012922_lung | 0 .00 RPM | 19 .09 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 3 .12 RPM |
| SRP012922_spleen | 0 .00 RPM | 21 .29 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1779 was not experimentally validated.