Parental gene:

PTP4A1, ENSVPAG00000004277

Aliases:None
Description:protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]
Organism:Alpaca (Vicugna pacos)
Coordinates:scaffold_2266:221681..224097(+)


>ENSVPAG00000004277
GAACTTAAGAAATACGGAGTTACCACGATAGTGAGAGTATGTGAAGCAACTTATGACACTACTCTTGTGGAGAAAGAAGG
CATCCATGTTCTTGATTGGCCCTTTGATGATGGTGCACCACCGTCTAACCAGATTGTTGATGATTGGTTAAGTCTTGTGA
AAATTAAGTTTCGTGAAGACCCTGGTTGTTGTATTGCTGTCCATTGTGTTGCAGGCCTTGGGAGAGCTCCGGTGCTTGTC
GCCCTAGCATTAATCGAAGGTGGAATGAAATACGAAGATGCAGTCCAGTTTATAAGACAAAAGCGGCGTGGAGCTTTTAA
CAGCAAGCAGCTTTTGTATTTGGAGAAGTATCGTCCTAAAATGCGGCTGCGCTTCAAAGACTCCAATGGTCATAGAAACA
ACTGTTGCATTCAGTAG

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002490 possible_ortholog 3 retrogenes
retro_cfam_1832, retro_cfam_206, retro_cfam_593,
Cavia porcellus ENSCPOG00000025759 possible_ortholog 5 retrogenes
retro_cpor_1137, retro_cpor_1233, retro_cpor_1392, retro_cpor_552, retro_cpor_58,
Dasypus novemcinctus ENSDNOG00000018507 possible_ortholog 4 retrogenes
retro_dnov_1850, retro_dnov_278, retro_dnov_692, retro_dnov_996,
Equus caballus ENSECAG00000022483 possible_ortholog 6 retrogenes
retro_ecab_10, retro_ecab_1075, retro_ecab_20, retro_ecab_425, retro_ecab_783, retro_ecab_869,
Echinops telfairi ENSETEG00000008183 possible_ortholog 6 retrogenes
retro_etel_1485, retro_etel_1681, retro_etel_1698, retro_etel_18, retro_etel_2153, retro_etel_668,
Latimeria chalumnae ENSLACG00000007183 ortholog_one2one 1 retrogene
retro_lcha_90,
Loxodonta africana ENSLAFG00000006572 possible_ortholog 8 retrogenes
retro_lafr_1054, retro_lafr_1120, retro_lafr_1133, retro_lafr_328, retro_lafr_670, retro_lafr_7, retro_lafr_780, retro_lafr_939,
Myotis lucifugus ENSMLUG00000001162 possible_ortholog 1 retrogene
retro_mluc_264,
Macaca mulatta ENSMMUG00000002777 possible_ortholog 1 retrogene
retro_mmul_1720,
Mustela putorius furo ENSMPUG00000003118 possible_ortholog 1 retrogene
retro_mputfur_17,
Oryctolagus cuniculus ENSOCUG00000006311 possible_ortholog 4 retrogenes
retro_ocun_225, retro_ocun_226, retro_ocun_24, retro_ocun_26,
Ochotona princeps ENSOPRG00000004938 ortholog_one2one 4 retrogenes
retro_opri_246, retro_opri_511, retro_opri_692, retro_opri_973,
Rattus norvegicus ENSRNOG00000011771 possible_ortholog 4 retrogenes
retro_rnor_1591, retro_rnor_2798, retro_rnor_494, retro_rnor_827,
Rattus norvegicus ENSRNOG00000046370 possible_ortholog 4 retrogenes
retro_rnor_2349, retro_rnor_2868, retro_rnor_612, retro_rnor_971,
Tupaia belangeri ENSTBEG00000009956 possible_ortholog 14 retrogenes
retro_tbel_1216, retro_tbel_1392, retro_tbel_2167, retro_tbel_2236, retro_tbel_23, retro_tbel_2549, retro_tbel_2570, retro_tbel_2611, retro_tbel_3144, retro_tbel_3295, retro_tbel_3424, retro_tbel_4074, retro_tbel_4123, retro_tbel_869,
Tursiops truncatus ENSTTRG00000004129 possible_ortholog 6 retrogenes
retro_ttru_34, retro_ttru_450, retro_ttru_571, retro_ttru_642, retro_ttru_643, retro_ttru_69,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_167 65.93 96.38
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2. retro_vpac_201 86.51 91.30
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3. retro_vpac_275 80.42 100.00
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4. retro_vpac_427 72.16 69.57
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5. retro_vpac_476 89.11 73.19
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6. retro_vpac_496 75.00 75.36
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7. retro_vpac_535 75.47 76.81
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8. retro_vpac_560 82.86 100.00
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9. retro_vpac_583 72.16 69.57
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Download FASTA sequences of all ENSVPAG00000004277 retrocopies