Parental gene:

TPM4, ENSTBEG00000012927

Aliases:None
Description:tropomyosin 4 [Source:HGNC Symbol;Acc:12013]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_4149:31170..46397(+)


>ENSTBEG00000012927
GCTGAAGGGGATGTGGCAGCTCTCAATCGACGCATCCAGCTGGTCGAGGAGGAGTTGGACAGGGCTCAAGAACGACTGGC
CACGGCCCTGCAGAAGCTGGAGGAGGCGGAAAAGGCGGCCGATGAGAGCGAGAGAGGAATGAAGGTGATTGAAAACCGAG
CCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGC
AAATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAAGGCGAGCTGGAAAGGGCAGAGGAGCGTGCGGAGGTGTCTGA
ACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACTAATAACCTGAAGTCGCTCGAGGCCGCCTCTGAAAAGT
ATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAAACTCCTTTCTGATAAACTGAAAGAGGCTGAGACCCGTGCCGAA
TTTGCAGAGAGAACGGTTGCCAAACTGGAAAAGACCATCGATGACCTGGAAGAAAAACTTGCCCAGGCCAAAGAAGAGAA
CGTGGGCTTACATCAGACACTGGATCAGACACTAAATGAACTTAATTGTATATAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004553 ortholog_one2one 2 retrogenes
retro_btau_1604, retro_btau_1758,
Canis familiaris ENSCAFG00000015796 ortholog_one2one 1 retrogene
retro_cfam_2107,
Callithrix jacchus ENSCJAG00000014135 possible_ortholog 1 retrogene
retro_cjac_206,
Gorilla gorilla ENSGGOG00000014510 ortholog_one2one 4 retrogenes
retro_ggor_1836, retro_ggor_2665, retro_ggor_2801, retro_ggor_609,
Monodelphis domestica ENSMODG00000014882 ortholog_one2one 1 retrogene
retro_mdom_1354,
Mus musculus ENSMUSG00000031799 ortholog_one2one 1 retrogene
retro_mmus_1625,
Nomascus leucogenys ENSNLEG00000005413 ortholog_one2one 2 retrogenes
retro_nleu_1952, retro_nleu_469,
Pan troglodytes ENSPTRG00000010637 ortholog_one2one 10 retrogenes
retro_ptro_1002, retro_ptro_1109, retro_ptro_1341, retro_ptro_1342, retro_ptro_1750, retro_ptro_1768, retro_ptro_2648, retro_ptro_2694, retro_ptro_2830, retro_ptro_516,
Pteropus vampyrus ENSPVAG00000009755 ortholog_one2one 2 retrogenes
retro_pvam_186, retro_pvam_187,
Ictidomys tridecemlineatus ENSSTOG00000024252 ortholog_one2one 1 retrogene
retro_itri_1858,
Tupaia belangeri ENSTBEG00000013764 within_species_paralog 1 retrogene
retro_tbel_1958,
Tarsius syrichta ENSTSYG00000010642 ortholog_one2one 9 retrogenes
retro_tsyr_1377, retro_tsyr_1613, retro_tsyr_1642, retro_tsyr_1853, retro_tsyr_628, retro_tsyr_694, retro_tsyr_704, retro_tsyr_742, retro_tsyr_749,
Tursiops truncatus ENSTTRG00000014542 ortholog_one2one 2 retrogenes
retro_ttru_504, retro_ttru_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_482 80.00 60.29
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2. retro_tbel_1435 84.95 100.00
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3. retro_tbel_2468 89.76 100.00
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4. retro_tbel_3663 78.95 92.65
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5. retro_tbel_3709 67.38 69.12
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6. retro_tbel_3872 88.66 94.61
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7. retro_tbel_4651 87.79 64.22
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Download FASTA sequences of all ENSTBEG00000012927 retrocopies