Parental gene:

RPS25, ENSSSCG00000015103

Aliases:None
Description:ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]
Organism:Pig (Sus scrofa)
Coordinates:9:51274635..51276899(-)


>ENSSSCG00000015103
CAGCCGCCCAAGGACGACAAGAAGAAGAAAGATGCCGGAAAGTCGGCCAAGAAAGACAAAGACCCAGTGAACAAATCTGG
GGGCAAGGCCAAAAAGAAGAAGTGGTCCAAAGGCAAAGTTCGGGACAAGCTTAATAACCTAGTCTTGTTTGACAAAGCGA
CATATGACAAACTCTGTAAAGAAGTTCCCAACTATAAGCTTATAACTCCAGCTGTTGTCTCTGAGAGACTGAAGATTCGT
GGTTCTCTGGCCAGGGCAGCCCTTCAGGAACTCCTGAGCAAAGGACTTATTAAACTGGTTTCAAAGCACAGAGCTCAAGT
AATTTACACGCGAAATACCAAGGGTGGAGATGCCCCAGCTGCTGGAGAAGATGCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 132 .07 RPM
SRP014902_testis 197 .60 RPM
SRP018288_heart 362 .18 RPM
SRP018288_kidney 263 .80 RPM
SRP018288_liver 277 .28 RPM
SRP018288_lung 251 .21 RPM
SRP018856_adipose 387 .94 RPM
SRP035408_brain 195 .36 RPM
SRP035408_liver 201 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000051 ortholog_one2one 5 retrogenes
retro_amel_1654, retro_amel_1765, retro_amel_574, retro_amel_60, retro_amel_684,
Canis familiaris ENSCAFG00000012395 ortholog_one2one 3 retrogenes
retro_cfam_500, retro_cfam_680, retro_cfam_984,
Cavia porcellus ENSCPOG00000013298 ortholog_one2one 2 retrogenes
retro_cpor_705, retro_cpor_9,
Felis catus ENSFCAG00000001151 ortholog_one2one 3 retrogenes
retro_fcat_1792, retro_fcat_601, retro_fcat_903,
Loxodonta africana ENSLAFG00000017117 ortholog_one2one 6 retrogenes
retro_lafr_1074, retro_lafr_270, retro_lafr_387, retro_lafr_431, retro_lafr_478, retro_lafr_90,
Microcebus murinus ENSMICG00000002687 possible_ortholog 8 retrogenes
retro_mmur_1023, retro_mmur_1514, retro_mmur_229, retro_mmur_308, retro_mmur_387, retro_mmur_425, retro_mmur_485, retro_mmur_688,
Myotis lucifugus ENSMLUG00000004752 ortholog_one2one 15 retrogenes
retro_mluc_1166, retro_mluc_1482, retro_mluc_1514, retro_mluc_1541, retro_mluc_1665, retro_mluc_1762, retro_mluc_1794, retro_mluc_1947, retro_mluc_2030, retro_mluc_2394, retro_mluc_467, retro_mluc_523, retro_mluc_649, retro_mluc_669, retro_mluc_903,
Monodelphis domestica ENSMODG00000013334 ortholog_one2one 2 retrogenes
retro_mdom_1267, retro_mdom_1615,
Mustela putorius furo ENSMPUG00000004960 ortholog_one2one 4 retrogenes
retro_mputfur_1288, retro_mputfur_372, retro_mputfur_525, retro_mputfur_671,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_223 70.49 97.60
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2. retro_sscr_368 83.87 98.40
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3. retro_sscr_594 84.68 99.20
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4. retro_sscr_717 87.40 100.00
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5. retro_sscr_930 90.24 98.40
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6. retro_sscr_1020 75.40 99.20
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7. retro_sscr_1034 90.00 88.00
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8. retro_sscr_1035 90.00 88.00
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9. retro_sscr_1055 75.40 99.20
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10. retro_sscr_1079 75.20 98.40
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11. retro_sscr_1107 76.00 98.40
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12. retro_sscr_1172 87.20 99.20
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Download FASTA sequences of all ENSSSCG00000015103 retrocopies