Parental gene:

NME4, ENSSSCG00000007986

Aliases:None
Description:NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:7852]
Organism:Pig (Sus scrofa)
Coordinates:3:41117779..41121920(+)


>ENSSSCG00000007986
ATGCCTGGCCTCTCGGGGCACCCCACGCTGCGGAGGCTGCTGTGCGGCGGGCTGGCCGGGGGCCCCCGCTTGTGTGCGCG
CCCCAACTCGGGTTGTCCCTCCTGGACCCGGGAGCGGACCCTGGTTGCGGTGAAGCCAGACGGGGTGCAGCGGCGGCTCG
TCGGGGACGTGATCCAGCGCTTTGAGAGGAGGGGCTTCAAGCTGGTGGGGATGAAGATGCTGCAGGTGCCAGAGAGCCTC
CTTGCTGAGCACTACCACGAGCTGCGGAGGAAGCCCTTCTACCCAGCCCTCATCAGCTACATGAGCTCCGGCCCAGTGGT
GGCCATGGTCTGGGAAGGTCCCAACGTGGTCTGCGCCTCGAGGGCCATGATAGGACACACCAACTCGGCCGAGGCTGCCC
CTGGCACCATCCGCGGAGACTTCAGCATCCATATCAGCAGGAATGTCATCCACGCCAGCGACTCTGTGGAAGGGGCCCAG
AGGGAGATCCAGCTGTGGTTCCAGAGCAGTGAGCTGGTGGACTGGGCGGACGAAGGCCACCACGGCAGCGCCGGTCCAGC
CTGA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .66 RPM
SRP014902_testis 2 .26 RPM
SRP018288_heart 0 .18 RPM
SRP018288_kidney 1 .77 RPM
SRP018288_liver 0 .16 RPM
SRP018288_lung 1 .63 RPM
SRP018856_adipose 0 .83 RPM
SRP035408_brain 2 .51 RPM
SRP035408_liver 0 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007077 ortholog_one2one 3 retrogenes
retro_amel_1271, retro_amel_216, retro_amel_238,
Canis familiaris ENSCAFG00000019677 ortholog_one2many 4 retrogenes
retro_cfam_1267, retro_cfam_2209, retro_cfam_447, retro_cfam_71,
Cavia porcellus ENSCPOG00000006496 ortholog_one2one 1 retrogene
retro_cpor_1076,
Echinops telfairi ENSETEG00000014875 possible_ortholog 1 retrogene
retro_etel_1833,
Felis catus ENSFCAG00000008300 ortholog_one2one 3 retrogenes
retro_fcat_1013, retro_fcat_1512, retro_fcat_1672,
Homo sapiens ENSG00000103202 ortholog_one2one 1 retrogene
retro_hsap_1740,
Gorilla gorilla ENSGGOG00000004512 ortholog_one2one 1 retrogene
retro_ggor_2259,
Macropus eugenii ENSMEUG00000005455 ortholog_one2one 5 retrogenes
retro_meug_1027, retro_meug_1427, retro_meug_1981, retro_meug_1999, retro_meug_694,
Myotis lucifugus ENSMLUG00000010061 ortholog_one2one 1 retrogene
retro_mluc_388,
Macaca mulatta ENSMMUG00000000612 ortholog_one2one 1 retrogene
retro_mmul_1221,
Mustela putorius furo ENSMPUG00000016017 ortholog_one2one 3 retrogenes
retro_mputfur_1024, retro_mputfur_1067, retro_mputfur_846,
Mus musculus ENSMUSG00000024177 ortholog_one2one 1 retrogene
retro_mmus_309,
Nomascus leucogenys ENSNLEG00000008068 ortholog_one2one 1 retrogene
retro_nleu_2719,
Otolemur garnettii ENSOGAG00000025808 ortholog_one2one 1 retrogene
retro_ogar_2689,
Pongo abelii ENSPPYG00000006908 ortholog_one2one 1 retrogene
retro_pabe_1442,
Pan troglodytes ENSPTRG00000007541 ortholog_one2one 1 retrogene
retro_ptro_1220,
Rattus norvegicus ENSRNOG00000049152 ortholog_one2one 1 retrogene
retro_rnor_2679,
Sus scrofa ENSSSCG00000011347 other_paralog 1 retrogene
retro_sscr_1076,
Sus scrofa ENSSSCG00000017591 within_species_paralog 1 retrogene
retro_sscr_854,
Ictidomys tridecemlineatus ENSSTOG00000004798 ortholog_one2many 1 retrogene
retro_itri_1629,
Tursiops truncatus ENSTTRG00000009157 ortholog_one2one 2 retrogenes
retro_ttru_393, retro_ttru_688,
Vicugna pacos ENSVPAG00000010316 ortholog_one2one 1 retrogene
retro_vpac_150,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_852 53.92 54.01
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2. retro_sscr_1113 52.78 57.22
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Download FASTA sequences of all ENSSSCG00000007986 retrocopies