Parental gene:

C1orf43, ENSSHAG00000012915

Aliases:None
Description:chromosome 1 open reading frame 43 [Source:HGNC Symbol;Acc:29876]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL856821.1:1129818..1134218(-)


>ENSSHAG00000012915
GTATTCGTGCTGCTGTTCATTTTTGTGAAGAGGCAGATCATGCGGTTTGCTATGAAGTCTCGAAGGGGCCCTCACGTCCC
CGTGGGGCACAACGCCCCCAAGGATCTGAAGGAAGAGATTGACATCCGACTCTCCAAGGTCCAGGATGTAAAGTATGAAC
CCCAGCTTCTTGAAGAGGATGATGCTAGACTTTTGCAGTTGGAGACACCAGGAAATCAACATTGCTACAATTACCTATAC
AGGATGAAAGCATTGGATGCCATTCGTGCCTCTGAGATCCCGTTCCATTCAGAAGGCCGGCATCCTCGTTCCCTGATGGG
CAAGAACTTCCGCTCCTATCTGTTGGAGCTTCGAAATACAAGTACCCCCTTCAAGGGTGTCAGAAAAGCTCTCATTGATA
CCCTGCTAGATGGCTATGAGACAGCTCGATATGGAACAGGCGTCTTTGGCCACACTGAATATCTACACTATCAGGAAGCA
CTAAGTGAACTGGCTGCCGCTGTCAAAGTCCGTGGTGGGAACTCCCAGCGGCAGCATCAATCAGCAGCTAAGGATCTAAC
ACAGTCTCCTGAAGTTTCCTCTCCAACAACCATCCAGGTCACCTATCTGCCCTCCAGCCAGAAGAGTAAAAGAGCGAAGC
ACTTCCTAGAGCTGAAGAGTTTTAAGGATAACTACAACACATTAGAGAGCACTCTCTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011865 ortholog_one2one 1 retrogene
retro_amel_190,
Callithrix jacchus ENSCJAG00000009722 ortholog_one2many 1 retrogene
retro_cjac_175,
Dasypus novemcinctus ENSDNOG00000019160 ortholog_one2one 1 retrogene
retro_dnov_2515,
Dipodomys ordii ENSDORG00000005454 ortholog_one2one 1 retrogene
retro_dord_190,
Equus caballus ENSECAG00000017585 ortholog_one2one 2 retrogenes
retro_ecab_618, retro_ecab_814,
Echinops telfairi ENSETEG00000001056 ortholog_one2many 15 retrogenes
retro_etel_1138, retro_etel_1318, retro_etel_1388, retro_etel_1633, retro_etel_2182, retro_etel_2205, retro_etel_2206, retro_etel_394, retro_etel_651, retro_etel_719, retro_etel_720, retro_etel_773, retro_etel_842, retro_etel_957, retro_etel_981,
Macropus eugenii ENSMEUG00000002600 ortholog_one2one 6 retrogenes
retro_meug_1149, retro_meug_1298, retro_meug_1439, retro_meug_1637, retro_meug_213, retro_meug_69,
Myotis lucifugus ENSMLUG00000013338 ortholog_one2many 1 retrogene
retro_mluc_537,
Monodelphis domestica ENSMODG00000017237 ortholog_one2one 3 retrogenes
retro_mdom_1283, retro_mdom_2003, retro_mdom_323,
Mus musculus ENSMUSG00000027942 ortholog_one2one 6 retrogenes
retro_mmus_1014, retro_mmus_1018, retro_mmus_1020, retro_mmus_1107, retro_mmus_1792, retro_mmus_490,
Otolemur garnettii ENSOGAG00000012008 ortholog_one2many 2 retrogenes
retro_ogar_2563, retro_ogar_38,
Ochotona princeps ENSOPRG00000007244 ortholog_one2one 2 retrogenes
retro_opri_426, retro_opri_586,
Pongo abelii ENSPPYG00000000785 ortholog_one2one 2 retrogenes
retro_pabe_3590, retro_pabe_969,
Pteropus vampyrus ENSPVAG00000002717 ortholog_one2one 1 retrogene
retro_pvam_696,
Rattus norvegicus ENSRNOG00000017758 ortholog_one2many 1 retrogene
retro_rnor_139,
Tupaia belangeri ENSTBEG00000013866 ortholog_one2one 1 retrogene
retro_tbel_177,
Tarsius syrichta ENSTSYG00000012777 ortholog_one2one 1 retrogene
retro_tsyr_91,
Tursiops truncatus ENSTTRG00000015824 ortholog_one2one 1 retrogene
retro_ttru_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_740 54.67 63.36
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Download FASTA sequences of all ENSSHAG00000012915 retrocopies