Parental gene:

C1orf43, ENSDNOG00000019160

Aliases:None
Description:chromosome 1 open reading frame 43 [Source:HGNC Symbol;Acc:29876]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3814:25377..52698(-)


>ENSDNOG00000019160
ATGGCGTCCGGCAGTAACTGGCTGTCTGGGGTGAATGTCGTGTTGGTGATGGCCTACGGGAGCCTGGTGTTTGTACTACT
ATTCATTTTTGTGAAGAGGCAAATTATGCGGTTTGCAATGAAATCTCGAAGGGGACCTCATGTCCCTGTGGGACACAATG
CCCCCAAGGACTTGAAAGAAGAGATTGATATGCGACTCTCCAGGGTTCAGGATATCAAATATGAACCCCAGCTCCTTGCC
GATGATGATACCAGACTGCTTCAGTTGGAAACCCAGGGAAATCAAAATTGCTACAACTATCTGTACAGGATGAAAGCTCT
GGATGCCATCCATGCCTCTGAGATCCCATTTCATGCTGAAGGCCGGCATGCTCGTTCACTAATGGGCAAGAATTTCCGTT
CCTACTTGCTGGATCTTCGAAACAGTAGTACTCCTTTCAAGGGTGTGCGCAAGGCCCTAATTGATACCCTCCTGGATGGC
TATGAGACAGCCCGCTATGGGACAGGGGTCTTTGGCCAGAGTGAGTACCTACGCTATCAGGAGGCCCTGACTGAGCTGGC
CACTGCGGTCAAAGCACGAAGTGGGAGCTCTCAGCGACATCACCAGTCAGCAGCCAAAGACCTTACTCAGTCTCTTGAAG
TTTCTCCAACAACCATCCAGGTGACATACCTCCCCTCCAGTCAGAAGAGTAAACGTGCCAAGCACTTCCTGGAATTGAAG
AGCTTTAAGGACAACTATAACACATTGGAGAGTACTCTGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 31 .89 RPM
SRP012922_cerebellum 27 .22 RPM
SRP012922_heart 21 .81 RPM
SRP012922_kidney 34 .77 RPM
SRP012922_liver 19 .20 RPM
SRP012922_lung 33 .29 RPM
SRP012922_quadricep_muscle 17 .48 RPM
SRP012922_spleen 29 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011865 ortholog_one2one 1 retrogene
retro_amel_190,
Callithrix jacchus ENSCJAG00000009722 possible_ortholog 1 retrogene
retro_cjac_175,
Equus caballus ENSECAG00000017585 ortholog_one2one 2 retrogenes
retro_ecab_618, retro_ecab_814,
Echinops telfairi ENSETEG00000001056 ortholog_one2one 15 retrogenes
retro_etel_1138, retro_etel_1318, retro_etel_1388, retro_etel_1633, retro_etel_2182, retro_etel_2205, retro_etel_2206, retro_etel_394, retro_etel_651, retro_etel_719, retro_etel_720, retro_etel_773, retro_etel_842, retro_etel_957, retro_etel_981,
Macropus eugenii ENSMEUG00000002600 ortholog_one2one 6 retrogenes
retro_meug_1149, retro_meug_1298, retro_meug_1439, retro_meug_1637, retro_meug_213, retro_meug_69,
Myotis lucifugus ENSMLUG00000013338 possible_ortholog 1 retrogene
retro_mluc_537,
Monodelphis domestica ENSMODG00000017237 ortholog_one2one 3 retrogenes
retro_mdom_1283, retro_mdom_2003, retro_mdom_323,
Otolemur garnettii ENSOGAG00000012008 ortholog_one2one 2 retrogenes
retro_ogar_2563, retro_ogar_38,
Pteropus vampyrus ENSPVAG00000002717 ortholog_one2one 1 retrogene
retro_pvam_696,
Rattus norvegicus ENSRNOG00000017758 possible_ortholog 1 retrogene
retro_rnor_139,
Sarcophilus harrisii ENSSHAG00000012915 ortholog_one2one 1 retrogene
retro_shar_740,
Tursiops truncatus ENSTTRG00000015824 ortholog_one2one 1 retrogene
retro_ttru_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_2515 96.05 100.00
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Download FASTA sequences of all ENSDNOG00000019160 retrocopies