Parental gene:

PTP4A2, ENSRNOG00000050044

Aliases:None
Description:Protein tyrosine phosphatase type IVA 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6P9X4]
Organism:Rat (Rattus norvegicus)
Coordinates:5:151775118..151784416(+)


>ENSRNOG00000050044
ATGAACCGTCCAGCCCCTGTGGAGATCTCGTACGAGAACATGCGTTTTCTGATAACTCACAACCCAACCAATGCGACTCT
CAACAAGTTCACCGAGGAACTCAAGAAGTACGGAGTGACAACTTTGGTCCGAGTTTGTGATGCTACCTATGACAAAGCTC
CAGTTGAAAAAGAAGGGATCCACGTTCTAGACTGGCCATTTGATGACGGAGCTCCGCCCCCTAATCAGATAGTAGATGAT
TGGCTAAACCTGTTAAAGACCAAATTCCGGGAAGAGCCAGGCTGCTGTGTCGCAGTGCATTGTGTTGCAGGATTGGGAAG
GGCTCCTGTGCTAGTTGCACTTGCACTGATTGAATGCGGAATGAAGTATGAAGATGCTGTTCAGTTTATAAGACAAAAAA
GAAGAGGAGCATTCAATTCCAAACAGCTGCTTTACTTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACC
AACGGGCACTGCTGTGTTCAGTAG

Library Parental gene expression (RPM)
SRP017611_brain 64 .49 RPM
SRP017611_kidney 114 .16 RPM
SRP017611_liver 32 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039121 ortholog_one2one 1 retrogene
retro_btau_638,
Callithrix jacchus ENSCJAG00000006539 ortholog_one2one 2 retrogenes
retro_cjac_3257, retro_cjac_566,
Homo sapiens ENSG00000184007 ortholog_one2one 4 retrogenes
retro_hsap_1069, retro_hsap_1754, retro_hsap_4331, retro_hsap_944,
Mus musculus ENSMUSG00000028788 ortholog_one2one 2 retrogenes
retro_mmus_1894, retro_mmus_2432,
Nomascus leucogenys ENSNLEG00000002137 ortholog_one2one 3 retrogenes
retro_nleu_2880, retro_nleu_2956, retro_nleu_3015,
Oryctolagus cuniculus ENSOCUG00000002060 ortholog_one2one 1 retrogene
retro_ocun_1673,
Otolemur garnettii ENSOGAG00000029603 ortholog_one2one 1 retrogene
retro_ogar_3341,
Pongo abelii ENSPPYG00000001606 ortholog_one2one 3 retrogenes
retro_pabe_1507, retro_pabe_808, retro_pabe_890,
Rattus norvegicus ENSRNOG00000011771 within_species_paralog 4 retrogenes
retro_rnor_1591, retro_rnor_2798, retro_rnor_494, retro_rnor_827,
Rattus norvegicus ENSRNOG00000046370 within_species_paralog 4 retrogenes
retro_rnor_2349, retro_rnor_2868, retro_rnor_612, retro_rnor_971,
Sus scrofa ENSSSCG00000003605 ortholog_one2one 1 retrogene
retro_sscr_1186,
Ictidomys tridecemlineatus ENSSTOG00000002775 ortholog_one2one 2 retrogenes
retro_itri_1165, retro_itri_152,
Tupaia belangeri ENSTBEG00000006790 ortholog_one2one 1 retrogene
retro_tbel_4601,
Tursiops truncatus ENSTTRG00000016571 ortholog_one2one 2 retrogenes
retro_ttru_1396, retro_ttru_1402,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_305 75.44 100.00
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Download FASTA sequences of all ENSRNOG00000050044 retrocopies