Parental gene:

Ptp4a2, ENSMUSG00000028788

Aliases:Ptp4a2, Prl-2
Description:protein tyrosine phosphatase 4a2 [Source:MGI Symbol;Acc:MGI:1277117]
Organism:Mouse (Mus musculus)
Coordinates:4:129811218..129850003(+)


>ENSMUSG00000028788
ATGAACCGTCCAGCCCCTGTGGAGATCTCTTATGAGAACATGCGTTTTCTGATAACTCACAACCCCACCAATGCGACTCT
CAACAAGTTCACAGAGGAACTTAAGAAGTACGGAGTGACAACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTC
CAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCGTTTGATGATGGAGCTCCACCCCCTAATCAGATAGTAGATGAT
TGGCTAAACCTGTTAAAAACCAAATTTCGTGAAGAGCCAGGCTGTTGTGTTGCAGTGCATTGTGTTGCAGGATTGGGAAG
GGCTCCTGTGCTAGTTGCGCTTGCATTGATTGAATGCGGAATGAAGTATGAAGATGCTGTTCAATTTATAAGACAAAAAA
GAAGAGGAGCATTCAATTCCAAACAGCTGCTTTACTTGGAGAAGTACCGACCTAAGATGCGGTTACGCTTCAGAGATACC
AATGGGCACTGCTGTGTTCAGTAG

Library Parental gene expression (RPM)
SRP007412_brain 98 .57 RPM
SRP007412_cerebellum 58 .31 RPM
SRP007412_heart 165 .27 RPM
SRP007412_kidney 127 .64 RPM
SRP007412_liver 105 .57 RPM
SRP007412_testis 70 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039121 ortholog_one2one 1 retrogene
retro_btau_638,
Callithrix jacchus ENSCJAG00000006539 ortholog_one2one 2 retrogenes
retro_cjac_3257, retro_cjac_566,
Homo sapiens ENSG00000184007 ortholog_one2one 4 retrogenes
retro_hsap_1069, retro_hsap_1754, retro_hsap_4331, retro_hsap_944,
Mus musculus ENSMUSG00000026064 within_species_paralog 10 retrogenes
retro_mmus_1192, retro_mmus_1830, retro_mmus_1874, retro_mmus_1891, retro_mmus_2138, retro_mmus_2876, retro_mmus_2985, retro_mmus_3053, retro_mmus_3527, retro_mmus_575,
Nomascus leucogenys ENSNLEG00000002137 ortholog_one2one 3 retrogenes
retro_nleu_2880, retro_nleu_2956, retro_nleu_3015,
Oryctolagus cuniculus ENSOCUG00000002060 ortholog_one2one 1 retrogene
retro_ocun_1673,
Otolemur garnettii ENSOGAG00000029603 ortholog_one2one 1 retrogene
retro_ogar_3341,
Pongo abelii ENSPPYG00000001606 ortholog_one2one 3 retrogenes
retro_pabe_1507, retro_pabe_808, retro_pabe_890,
Rattus norvegicus ENSRNOG00000050044 ortholog_one2one 1 retrogene
retro_rnor_305,
Sus scrofa ENSSSCG00000003605 ortholog_one2one 1 retrogene
retro_sscr_1186,
Ictidomys tridecemlineatus ENSSTOG00000002775 ortholog_one2one 2 retrogenes
retro_itri_1165, retro_itri_152,
Tupaia belangeri ENSTBEG00000006790 ortholog_one2one 1 retrogene
retro_tbel_4601,
Tursiops truncatus ENSTTRG00000016571 ortholog_one2one 2 retrogenes
retro_ttru_1396, retro_ttru_1402,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1894 95.21 100.00
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2. retro_mmus_2432 78.95 100.00
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Download FASTA sequences of all ENSMUSG00000028788 retrocopies