Parental gene:

Fdps, ENSRNOG00000043377

Aliases:Fdps, Ac2-125, FPS
Description:farnesyl pyrophosphate synthase [Source:RefSeq peptide;Acc:NP_114028]
Organism:Rat (Rattus norvegicus)
Coordinates:2:207805216..207826348(-)


>ENSRNOG00000043377
ATGCCCCTGTCCCGCTGGCTGAGATCTCTGGGGGTCTTCCTGCTGCCAGCCCCCTGCTGGGCACCCCGGGAGAGGTGGCT
TGGTTACCTACAACGACCCTCCCTGGCATATGGGTGTCCAGTCCTTGGGGCTTGGCACAGTGCCCGCTGGTGGTGCCAAG
TGTGGACAGAGGAGCCTCGAGCATTTAGCTCCTCTGTCAGAATGAATGGGGACCAGAAACTGGATGTTCATAACCAAGAA
AAGCAGAATTTCATCCAGCACTTCTCCCAGATTGTCAAGGTGCTGACTGAGGATGAACTGGGACACCCAGAGAAGGGAGA
TGCTATTACCCGGATCAAAGAGGTCCTGGAGTACAACACTGTAGGAGGCAAGTACAATCGGGGTCTGACGGTGGTACAGA
CCTTCCAGGAACTGGTGGAACCAAGGAAACAGGATGCTGAGAGCCTACAGCGGGCCCTGACGGTGGGCTGGTGTGTAGAA
CTGCTCCATGCTTTCTTCCTCGTGTTAGATGACATCATGGACTCTTCCCACACTCGCCGGGGGCAGATCTGCTGGTATCA
GAAGCCGGGCATAGGCTTGGATGCCATCAACGATGCTCTGCTTCTGGAAGCCGCTATCTACCGCCTGCTTAAGTTCTACT
GCAGGGAGCAGCCCTACTACCTCAACCTGCTGGAGCTCTTTCTACAGAGTTCCTATCAGACTGAGATCGGGCAGACTCTC
GACCTCATCACAGCACCCCAGGGCCAAGTGGATCTTGGTAGATACACTGAAAAGAGGTACAAATCTATCGTCAAGTACAA
GACAGCTTTCTACTCTTTCTACCTGCCTATCGCGGCTGCCATGTACATGGCTGGAATTGATGGGGAGAAGGAACACGCTA
ATGCCCTGAAGATCCTGCTGGAGATGGGCGAGTTCTTCCAGATCCAGGAGAATTATGGGCAGAAGGACCCAGAAAAAGTG
GCGCGGGTGAAAGCACTGTACGAGGAGCTGGATCTGCGGAGTGTGTTCTTCAAGTACGAGGAAGACAGTTACAACCGCCT
CAAGAGTCTCATAGAGCAGTGCTCCGCGCCCCTGCCCCCATCCATCTTCCTGGAACTAGCAAACAAGATCTACAAGCGGA
GAAACTCCTGCTCAGATCTTAGCCCTGATGAGTCTCCAGTGTCAGTCTACTCTCGAGACCTGCCGGGTAATGAGGATGCC
AACCCTCAGGCCAGCATCTTCCCCTTGGAGCTGGGCTCTCCTCTGGCTCCCGCGGTGCGCAGTTCCTGGTCGTTTGCCGG
TGTTCCGGGGGCCCAGCGGCTGTGGATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAGGTCTCC
TGATAGCTGTCAGCGCTTCAGTGGACAAAATCATCTCGCACTTTGGGGCTGCTAGGAACTTGGTTCAGAAAGCTCAACTG
GGGGATAGCCGGCTGAGTCCAGATGTGGGGCATCTGGTATTGACCACGCTCTGCCCGGCTCTCCATGCTCTGGTGGCTGA
TGGGCTGAAGCCATTCCGGAAGGACCTCATTACCGGGCAGCGTAGGAGTAGCCCTTGGAGCGTGGTGGAGGCCTCTGTGA
AACCAGGTTCCTGCACACATTCCATGGGATCTCTGTACAGCCAGGTCAGCCGACTGGCCCCCCTGAGTAGCAGCCGCAGC
CGCTTCCACGCTTTCATCTTGGGCCTCCTCAATACCAAACAGTTGGAACTGTGGTTCTCCACCCTCCAGGAGGATGCAGG
CCTCCTATCCCTCTTGTATCTGCCCACCGGCTTCTTTTCCCTGGCACGCGGTAGCTGTCCATCCCTGGCTACAGAGCTGC
TGCTTCTGCTGCAGCCGCTGTCGGTGCTCACCTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTGCCCCTGGGC
CTGCAGCAGGCTCCTGCCCCTTCAGGCCCCCCTCCTGCCCTCCAGCAGACTATGCAGGCTGTGCTGCACTGGGGGGGACG
TTTGGCTCAGACTCTCCGAGGGACTTCAGGGGAGGCCACTACAGACTCTTCGACCCCCTCCACGCGCCCTCCACCAGGCA
GCTGGTGGGATCAGCTGACCCAGGCTTCTCGAGTCTATGCCTCTGGAGGCACTGAGGGCTTCCCTCTTCTTCGGTGGGGA
CCCAGGCGGAATGGAACTACCGCTGAGGGTACACAGGAGGCACCTCCACCCACGGAACAAACCACACCAGGCAGAAGCGT
GTGGTTGGGGCGGCTATTTGGTGTGCCTGGGTGCTCCTCAGAAACTGACAGCGGCGCCTTCAAGTCCAGGAGACCATCCA
GCTGGTTGCCCCCAACAGTAAGTGTGCTGGCTCTGGTGAAGAGGGGGACGCCACCCGAGGTCCCTCCTGAGGAGCCTGTG
AAGGAACCAGCCTGCATGGTGCAGGCTGACAGGGCAGTCCGGGCTCTCTGTGACCACACTGCTGCAGGACCTGACCAGTT
GAGCTTCCAGCGTGGGGAAGTGCTTCGTGTCATTTCCACAGTGGATGAGGACTGGCTTCGCTGTGGGCGGGATGGTGTGG
AGGGGCTGGTGCCGACTGCTGTTTCAGTGGCTGATGGAGCCCGAATAAAGACTAGAACAATGGAAGCACAGCCCTTGTAA

Library Parental gene expression (RPM)
SRP017611_brain 133 .15 RPM
SRP017611_kidney 47 .24 RPM
SRP017611_liver 215 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000030749 ortholog_one2many 2 retrogenes
retro_cfam_1822, retro_cfam_1888,
Callithrix jacchus ENSCJAG00000008364 possible_ortholog 11 retrogenes
retro_cjac_1066, retro_cjac_1217, retro_cjac_1395, retro_cjac_157, retro_cjac_2011, retro_cjac_2081, retro_cjac_2161, retro_cjac_299, retro_cjac_4154, retro_cjac_44, retro_cjac_70,
Echinops telfairi ENSETEG00000001154 ortholog_one2many 6 retrogenes
retro_etel_1770, retro_etel_1818, retro_etel_2179, retro_etel_730, retro_etel_743, retro_etel_990,
Homo sapiens ENSG00000160752 possible_ortholog 6 retrogenes
retro_hsap_1519, retro_hsap_1558, retro_hsap_1560, retro_hsap_3871, retro_hsap_3872, retro_hsap_502,
Microcebus murinus ENSMICG00000007468 possible_ortholog 1 retrogene
retro_mmur_1148,
Macaca mulatta ENSMMUG00000023144 possible_ortholog 3 retrogenes
retro_mmul_1190, retro_mmul_2152, retro_mmul_565,
Mus musculus ENSMUSG00000059743 ortholog_one2many 5 retrogenes
retro_mmus_1028, retro_mmus_1552, retro_mmus_2802, retro_mmus_3625, retro_mmus_590,
Nomascus leucogenys ENSNLEG00000012099 possible_ortholog 6 retrogenes
retro_nleu_1486, retro_nleu_1727, retro_nleu_2301, retro_nleu_2405, retro_nleu_2595, retro_nleu_2692,
Pongo abelii ENSPPYG00000000747 possible_ortholog 3 retrogenes
retro_pabe_1290, retro_pabe_1329, retro_pabe_235,
Pan troglodytes ENSPTRG00000001422 possible_ortholog 9 retrogenes
retro_ptro_1028, retro_ptro_1048, retro_ptro_1049, retro_ptro_2637, retro_ptro_2638, retro_ptro_2639, retro_ptro_2940, retro_ptro_2995, retro_ptro_377,
Ictidomys tridecemlineatus ENSSTOG00000004475 possible_ortholog 1 retrogene
retro_itri_488,
Tursiops truncatus ENSTTRG00000013326 ortholog_one2many 1 retrogene
retro_ttru_689,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_153 86.62 88.95
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2. retro_rnor_1175 73.91 51.27
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3. retro_rnor_2897 90.37 100.00
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Download FASTA sequences of all ENSRNOG00000043377 retrocopies