Parental gene:

FDPS, ENSETEG00000001154

Aliases:None
Description:farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631]
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_6626:199832..205616(+)


>ENSETEG00000001154
ATGCCTCCGTCCCGCTGGCTGAGCTCTATGGGGGCCTTCCTGCTGCCAGGCCCCTGCTGGGTGCCCCAGGTGAGGTGCCT
TCGAGTCCCAAGGCAGCCCTCCCTGGTGCAAGGGTGCCCAGTCCTGGGGGCCAGGCGCAGTGCCCGCCGCTGGGGCCAAG
CGTGGATAGAGGAGCCTCGAGCATTTTGCTCCTCTCTCAGAATGAATGGAGACCAGAAAGTGGACGCTTACGCCCAAGAA
AAGGAGAATTTCATCCAGCATTTCTCCCATGTGCTCAAAGTGCTGGTCGAGGATGACCTGGGGCACCCAGAGACGGGAGA
CGCTGTTGCCCGGCTCAAGAAGGTCCTGGAATACAATGTCATCGGAGGCAAATACAACCGAGGTATGACGGTGGTAGCTG
TGTTCCAGGCGCTGGCGGAGCCCGGGCAGCAGGATGCTGACAGTCTGCAGCGGGCGCTGACCGTGGGCTGGTGTGTGGAG
TTGCTCCAAGCTTTCCTCCTGATACTGGATGACATAATGGATTCATCCCTCACCCGCCGGGGGCAGCCCTGCTGGTACCA
GAAGCCAGGCATAGGTCTGGATGCCATCAATGACGCCATGCTGCTGGAATCCTCTATCTACCGCCTGTTGAAGTTCTACT
GCCGGGGGCAGCCCTACTACCTGAACCTGATGGAGCTCTTCCTGGAGAGTTCCTATCAGACTGAGATAGGACAGACCCTG
GACCTCATCACTGCCCCTCAGGGCAACGTGGATCTCAGCAGATTTACCCCAAAGAGGTACAAATCCATTGTCAAGTACAA
GACCTCGTTCTACTCCTTTTACCACCCCGTCGCTGCTGCCATGTACATGGCGGGCATTGACGGGGAGAAGGAGCATGCCG
ATGCCAAGCGGATCCTGCTGGAGATGGGCGAGTACTTTCAGATCCAGGATGATTATCTGGACCTCTTTGGTGACCCCAGT
GTGACAGGCAAGGTTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCGGGCCTCTCC
GGAGCAGCGTCGGGTCCTGCAG

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000030749 ortholog_one2one 2 retrogenes
retro_cfam_1822, retro_cfam_1888,
Callithrix jacchus ENSCJAG00000008364 ortholog_one2many 11 retrogenes
retro_cjac_1066, retro_cjac_1217, retro_cjac_1395, retro_cjac_157, retro_cjac_2011, retro_cjac_2081, retro_cjac_2161, retro_cjac_299, retro_cjac_4154, retro_cjac_44, retro_cjac_70,
Homo sapiens ENSG00000160752 ortholog_one2one 6 retrogenes
retro_hsap_1519, retro_hsap_1558, retro_hsap_1560, retro_hsap_3871, retro_hsap_3872, retro_hsap_502,
Microcebus murinus ENSMICG00000007468 ortholog_one2one 1 retrogene
retro_mmur_1148,
Macaca mulatta ENSMMUG00000023144 ortholog_one2many 3 retrogenes
retro_mmul_1190, retro_mmul_2152, retro_mmul_565,
Mus musculus ENSMUSG00000059743 ortholog_one2one 5 retrogenes
retro_mmus_1028, retro_mmus_1552, retro_mmus_2802, retro_mmus_3625, retro_mmus_590,
Nomascus leucogenys ENSNLEG00000012099 ortholog_one2one 6 retrogenes
retro_nleu_1486, retro_nleu_1727, retro_nleu_2301, retro_nleu_2405, retro_nleu_2595, retro_nleu_2692,
Pongo abelii ENSPPYG00000000747 ortholog_one2many 3 retrogenes
retro_pabe_1290, retro_pabe_1329, retro_pabe_235,
Pan troglodytes ENSPTRG00000001422 ortholog_one2one 9 retrogenes
retro_ptro_1028, retro_ptro_1048, retro_ptro_1049, retro_ptro_2637, retro_ptro_2638, retro_ptro_2639, retro_ptro_2940, retro_ptro_2995, retro_ptro_377,
Rattus norvegicus ENSRNOG00000043377 ortholog_one2many 3 retrogenes
retro_rnor_1175, retro_rnor_153, retro_rnor_2897,
Ictidomys tridecemlineatus ENSSTOG00000004475 ortholog_one2many 1 retrogene
retro_itri_488,
Tursiops truncatus ENSTTRG00000013326 ortholog_one2one 1 retrogene
retro_ttru_689,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_730 87.21 83.33
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2. retro_etel_743 89.60 56.78
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3. retro_etel_990 84.71 67.80
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4. retro_etel_1770 85.27 72.32
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5. retro_etel_1818 78.28 62.43
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6. retro_etel_2179 61.60 69.77
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Download FASTA sequences of all ENSETEG00000001154 retrocopies