Parental gene:

Rpl5, ENSRNOG00000023529

Aliases:None
Description:60S ribosomal protein L5 [Source:UniProtKB/Swiss-Prot;Acc:P09895]
Organism:Rat (Rattus norvegicus)
Coordinates:14:2861179..2867612(-)


>ENSRNOG00000023529
ATGGGGTTCGTGAAAGTTGTCAAGAATAAGGCCTACTTTAAAAGATACCAAGTGAGATTTAGAAGGCGGCGAGAGGGTAA
AACTGACTACTATGCACGGAAACGATTGGTGATCCAGGACAAAAATAAGTACAACACACCGAAATACAGGATGATAGTTC
GTGTAACGAACAGAGACATCATCTGCCAGATTGCATATGCCCGTATAGAAGGGGATATGATCGTCTGTGCAGCATATGCA
CATGAACTTCCAAAATACGGTGTGAAAGTTGGCCTGACAAACTATGCTGCAGCCTATTGCACTGGCCTGCTGCTGGCCCG
CAGGCTTCTGAATAGGTTTGGCATGGACAAGATCTATGAAGGCCAAGTGGAGGTGAATGGAGACGAGTACAATGTGGAAA
GCATAGACGGTCAGCCTGGTGCCTTCACTTGCTATCTGGATGCGGGTCTTGCCCGAACTACAACTGGCAATAAAGTTTTT
GGCGCCCTGAAGGGAGCTGTGGATGGAGGCTTATCTATCCCCCATAGTACCAAACGATTCCCTGGCTATGACTCTGAAAG
CAAGGAGTTCAATGCAGAGGTGCACCGGAAGCACATCATGGGTCAGAATGTGGCAGACTACATGCGCTACCTGATGGAGG
AGGATGAGGATGCGTATAAGAAACAGTTCTCTCAGTACATCAAGAACAACGTGACTCCAGACATGATGGAGGAGATGTAT
AAGAAAGCTCATGCTGCTATCCGAGAGAATCCAGTCTACGAGAAGAAGCCCAAGAGAGAAGTGAAGAAGAAGAGGTGGAA
TCGTCCCAAAATGTCTCTTGCCCAGAAGAAAGACCGGGTTGCTCAAAAGAAGGCAAGCTTCCTCAGAGCTCAGGAACGGG
CTGCTGAAAGCTAA

Library Parental gene expression (RPM)
SRP017611_brain 103 .75 RPM
SRP017611_kidney 183 .25 RPM
SRP017611_liver 112 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009878 ortholog_one2many 5 retrogenes
retro_amel_1200, retro_amel_137, retro_amel_139, retro_amel_1439, retro_amel_1669,
Bos taurus ENSBTAG00000002026 ortholog_many2many 2 retrogenes
retro_btau_120, retro_btau_67,
Cavia porcellus ENSCPOG00000000698 possible_ortholog 8 retrogenes
retro_cpor_1047, retro_cpor_1097, retro_cpor_1141, retro_cpor_1259, retro_cpor_1354, retro_cpor_1387, retro_cpor_428, retro_cpor_737,
Dipodomys ordii ENSDORG00000005674 possible_ortholog 2 retrogenes
retro_dord_226, retro_dord_670,
Equus caballus ENSECAG00000021065 ortholog_one2many 1 retrogene
retro_ecab_654,
Macropus eugenii ENSMEUG00000006361 ortholog_one2many 3 retrogenes
retro_meug_1168, retro_meug_1537, retro_meug_2146,
Monodelphis domestica ENSMODG00000011635 ortholog_one2many 1 retrogene
retro_mdom_748,
Mustela putorius furo ENSMPUG00000004150 ortholog_one2many 6 retrogenes
retro_mputfur_213, retro_mputfur_449, retro_mputfur_451, retro_mputfur_597, retro_mputfur_721, retro_mputfur_833,
Mus musculus ENSMUSG00000058558 ortholog_one2many 11 retrogenes
retro_mmus_1000, retro_mmus_1185, retro_mmus_1338, retro_mmus_1789, retro_mmus_1991, retro_mmus_2577, retro_mmus_2846, retro_mmus_297, retro_mmus_3076, retro_mmus_504, retro_mmus_911,
Ornithorhynchus anatinus ENSOANG00000004669 ortholog_many2many 1 retrogene
retro_oana_97,
Oryctolagus cuniculus ENSOCUG00000010089 ortholog_many2many 2 retrogenes
retro_ocun_265, retro_ocun_54,
Petromyzon marinus ENSPMAG00000002040 ortholog_one2many 1 retrogene
retro_pmar_23,
Pteropus vampyrus ENSPVAG00000015117 ortholog_one2many 4 retrogenes
retro_pvam_1427, retro_pvam_355, retro_pvam_505, retro_pvam_527,
Sarcophilus harrisii ENSSHAG00000006417 ortholog_one2many 1 retrogene
retro_shar_202,
Sus scrofa ENSSSCG00000006899 ortholog_one2many 2 retrogenes
retro_sscr_149, retro_sscr_219,
Tupaia belangeri ENSTBEG00000010560 ortholog_one2many 5 retrogenes
retro_tbel_101, retro_tbel_1054, retro_tbel_1518, retro_tbel_3006, retro_tbel_3530,
Tursiops truncatus ENSTTRG00000013097 ortholog_one2many 5 retrogenes
retro_ttru_1446, retro_ttru_1548, retro_ttru_1796, retro_ttru_645, retro_ttru_979,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_113 96.63 100.00
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2. retro_rnor_2246 87.27 89.56
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3. retro_rnor_2418 74.38 67.68
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4. retro_rnor_2498 74.88 67.68
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5. retro_rnor_2802 96.55 77.78
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6. retro_rnor_2922 71.91 88.89
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Download FASTA sequences of all ENSRNOG00000023529 retrocopies