Parental gene:

Lpcat2, ENSRNOG00000016643

Aliases:Lpcat2, LPCAT-2, RGD1563994
Description:lysophosphatidylcholine acyltransferase 2 [Source:RefSeq peptide;Acc:NP_001258273]
Organism:Rat (Rattus norvegicus)
Coordinates:19:26567386..26627661(-)


>ENSRNOG00000016643
ATGAACCGATGCGCCGAGGCGGCCGCTGTGGCGGCTACGGTGCCGGGTTCGGGAGTCGGGGACTCCGGGCTGCGGCCGCC
CATGGTACCTCGCCAGGCGTCCTTCTTCCCTCCACCGGTGCCCAATCCCTTCGTCCAGCAGACGAGGATCAGTGCGGCCC
GGCGGCTGCAGATGATTCTCCTTGGAATTATTCTGCTTCCAGTCCGTGCTTTACTGGTTGGATTAGTTTTGCTGCTGGCA
TGGCCCTTTGCTGTAATCTCAACAGTATGCTGCCCTAAAAAGCTGACCCATCCAATAAGCGATTGGAGGAGGAAGATCAC
TCAGCCCGCCTTGAAGTTCCTGGGTCGTGCCATGTTCTTCTCCATGGGGTTTAGGGTTACCGTGAAAGGAAAGGTGGCTA
GCCCTCTGGAGGCGCCCATTTTTGTCGTTGCTCCTCACTCCACGTTCTTCGATGGAATTGCCTGTGTAGTAGCGGGGCTG
CCCTCTCTGGTGTCACGGAATGAGAACGCCCAGACCCCTCTGGTTGGCAGACTGTTACGGGCTTTGCAGCCGGTTTTGGT
ATCCCGTGTTGATCCGGATTCCCGAAAAAACACGATCAACGAAATAAAAAAGCGAGCAATGTCAGGCGGGGAGTGGCCCC
AGATACTAGTTTTCCCAGAAGGTACTTGTACTAATCGGTCCTGTTTGATTACTTTTAAACCAGGAGCCTTTATCCCGGGA
GTTCCAGTGCAACCCGTCCTCCTCAGATATCCCAACAAGCTGGATACTGTAACCTGGACCTGGCAAGGATATACTTTCAT
CCAGCTGTGTGTGCTCACATTCTGTCAACTGTTCACAAAGGTGGAAGTTGAGTTTATGCCTGTGCAAGCACCAAGTGAGG
AAGAGAGGAATGATCCTGTCCTTTTCGCCAGTAGAGTCCGGAATTTGATGGCGGAAGCTTTGGAAATACCAGTAACGGAT
CACACCTATGAAGACTGCAGGCTGATGATCTCAGCGGGGCAGCTCACGCTGCCTATGGAGGCTGGGCTGGTAGAATTCAC
TAAGATTAGCCGGAAACTGAAGCTGGACTGGGACGGCATCCGAAAGCACTTGGACGAGTACGCGTCAATCGCAAGCTCCG
CCAAAGGAGGCCGAATTGGAATCGAGGAGTTCGCAGAGTACCTGAAGCTGCCCGTTTCCGATGTCCTGCGACAACTTTTT
GCTCTCTTTGACAGGAATAACGACGGCAGTATTGACTTCCGGGAGTACGTGATCGGCTTGGCTGTCTTGTGCAACCCTGC
CAACACAGAAGACATCATCCAGGTGGCATTTAAGCTCTTTGATGTTGATGAGGACGGCTACATCACGGAGGAAGAGTTTT
GCACCATTCTGCAGGCTTCTCTCGGAGTGCCTGACCTTAATGTTTCTGGGCTCTTCAGAGAAATTGCCCAAGGGGACTCT
GTTTCCTACGAGGAATTCAAAAGTTTTGCTCTGAAGCACCCAGAATATGCCAAGATATTTACAACATATTTAGACCTCCA
GACATGCCATGTGTTTTCACTGCCAGAAGACGTCCAGACAGCTCCCTCTGTTGCTAGTAATAAAGTGAGCCCCGAGAGCC
ATGAGGAGGGTACCTCAGGCAAAAAGGTTGACTGA

Library Parental gene expression (RPM)
SRP017611_brain 7 .55 RPM
SRP017611_kidney 4 .33 RPM
SRP017611_liver 0 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019272 ortholog_one2one 1 retrogene
retro_btau_64,
Callithrix jacchus ENSCJAG00000012902 ortholog_one2one 1 retrogene
retro_cjac_2945,
Dasypus novemcinctus ENSDNOG00000006859 ortholog_one2one 1 retrogene
retro_dnov_1735,
Dipodomys ordii ENSDORG00000013193 ortholog_one2one 1 retrogene
retro_dord_399,
Equus caballus ENSECAG00000009649 ortholog_one2one 1 retrogene
retro_ecab_865,
Erinaceus europaeus ENSEEUG00000014277 ortholog_one2one 1 retrogene
retro_eeur_109,
Homo sapiens ENSG00000087253 ortholog_one2one 1 retrogene
retro_hsap_185,
Gorilla gorilla ENSGGOG00000005144 ortholog_one2one 1 retrogene
retro_ggor_266,
Loxodonta africana ENSLAFG00000003965 ortholog_one2one 1 retrogene
retro_lafr_66,
Myotis lucifugus ENSMLUG00000004008 ortholog_one2one 1 retrogene
retro_mluc_88,
Macaca mulatta ENSMMUG00000004478 ortholog_one2one 1 retrogene
retro_mmul_392,
Mus musculus ENSMUSG00000033192 ortholog_one2one 1 retrogene
retro_mmus_270,
Nomascus leucogenys ENSNLEG00000001258 ortholog_one2one 1 retrogene
retro_nleu_994,
Pongo abelii ENSPPYG00000007358 ortholog_one2one 1 retrogene
retro_pabe_445,
Pan troglodytes ENSPTRG00000008124 ortholog_one2one 2 retrogenes
retro_ptro_171, retro_ptro_2928,
Pteropus vampyrus ENSPVAG00000007801 ortholog_one2one 1 retrogene
retro_pvam_173,
Sorex araneus ENSSARG00000011914 ortholog_one2one 1 retrogene
retro_sara_88,
Sarcophilus harrisii ENSSHAG00000012383 ortholog_one2one 1 retrogene
retro_shar_116,
Tursiops truncatus ENSTTRG00000001182 ortholog_one2one 1 retrogene
retro_ttru_188,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_309 62.63 89.15
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Download FASTA sequences of all ENSRNOG00000016643 retrocopies