Parental gene:

Edf1, ENSRNOG00000016272

Aliases:Edf1, CAP-19
Description:Endothelial differentiation-related factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P69736]
Organism:Rat (Rattus norvegicus)
Coordinates:3:2762581..2766887(+)


>ENSRNOG00000016272
ATGGCCGAGAGTGACTGGGACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCAAGTCTAAGCAGGC
CATCTTAGCAGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAAAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCA
TCACTAAAAACACAGCCAAGCTAGACCGGGAGACAGAGGAGCTGCACCACGACAGGGTGACCCTGGAGGTGGGCAAAGTG
ATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACGCAGAAGGACCTGGCCACGAAAATCAATGAAAAGCCGCAAGTCATCGC
AGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGG
GGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 57 .73 RPM
SRP017611_kidney 76 .97 RPM
SRP017611_liver 31 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013266 ortholog_one2one 2 retrogenes
retro_amel_1569, retro_amel_996,
Canis familiaris ENSCAFG00000019544 ortholog_one2one 4 retrogenes
retro_cfam_1283, retro_cfam_1812, retro_cfam_363, retro_cfam_895,
Callithrix jacchus ENSCJAG00000011166 ortholog_one2many 1 retrogene
retro_cjac_374,
Erinaceus europaeus ENSEEUG00000009565 ortholog_one2one 1 retrogene
retro_eeur_635,
Loxodonta africana ENSLAFG00000026812 ortholog_one2one 1 retrogene
retro_lafr_751,
Macropus eugenii ENSMEUG00000015037 possible_ortholog 7 retrogenes
retro_meug_108, retro_meug_1742, retro_meug_1805, retro_meug_2070, retro_meug_38, retro_meug_598, retro_meug_773,
Microcebus murinus ENSMICG00000016498 ortholog_one2one 1 retrogene
retro_mmur_312,
Macaca mulatta ENSMMUG00000005051 ortholog_one2many 1 retrogene
retro_mmul_89,
Monodelphis domestica ENSMODG00000017329 ortholog_one2one 1 retrogene
retro_mdom_1713,
Mustela putorius furo ENSMPUG00000011008 ortholog_one2one 1 retrogene
retro_mputfur_1377,
Mus musculus ENSMUSG00000015092 ortholog_one2one 3 retrogenes
retro_mmus_3324, retro_mmus_688, retro_mmus_809,
Sorex araneus ENSSARG00000007191 possible_ortholog 1 retrogene
retro_sara_39,
Tupaia belangeri ENSTBEG00000014060 ortholog_one2one 4 retrogenes
retro_tbel_1404, retro_tbel_1950, retro_tbel_3538, retro_tbel_967,
Tursiops truncatus ENSTTRG00000002668 ortholog_one2one 2 retrogenes
retro_ttru_165, retro_ttru_894,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1407 87.85 71.62
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2. retro_rnor_2005 83.02 70.95
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3. retro_rnor_2007 83.18 71.62
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4. retro_rnor_2616 84.69 64.19
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Download FASTA sequences of all ENSRNOG00000016272 retrocopies