Parental gene:

EDF1, ENSEEUG00000009565

Aliases:None
Description:endothelial differentiation-related factor 1 [Source:HGNC Symbol;Acc:3164]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_432:57270..61740(-)


>ENSEEUG00000009565
GCCATTTTAGCAGCTCAGAGGCGAGGAGAAGATGTGGAGACTTCTAAAAAATGGGCCGCTGGTCAGAACAAACAGCATTC
GATCACTAAGAACACAGCCAAGCTGGACCGGGAGACTGAAGAGCTGCACCATGACCGGGTAACCCTGGAAGTGGGCAAAG
TGATCCAGCAGGGCCGACAGAGCAAGGGGCTGACACAGAAGGACTTGGCAACAAAAATCAATGAAAAGCCACAAGTCATC
GCAGACTACGAGAGTGGACGGGCCATCCCCAATAACCAGGTTCTTGGCAAAATCGAGAGAGCCATTGGCCTCAAGCTCCG
GGGCAAGGACATTGGGAAGCCGATCGAGAAGGGGCCAAGGGCGAAATGA

Library Parental gene expression (RPM)
SRP017611_brain 65 .75 RPM
SRP017611_kidney 188 .10 RPM
SRP017611_liver 118 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013266 ortholog_one2one 2 retrogenes
retro_amel_1569, retro_amel_996,
Canis familiaris ENSCAFG00000019544 ortholog_one2one 4 retrogenes
retro_cfam_1283, retro_cfam_1812, retro_cfam_363, retro_cfam_895,
Callithrix jacchus ENSCJAG00000011166 ortholog_one2many 1 retrogene
retro_cjac_374,
Loxodonta africana ENSLAFG00000026812 ortholog_one2one 1 retrogene
retro_lafr_751,
Macropus eugenii ENSMEUG00000015037 possible_ortholog 7 retrogenes
retro_meug_108, retro_meug_1742, retro_meug_1805, retro_meug_2070, retro_meug_38, retro_meug_598, retro_meug_773,
Microcebus murinus ENSMICG00000016498 ortholog_one2one 1 retrogene
retro_mmur_312,
Macaca mulatta ENSMMUG00000005051 ortholog_one2many 1 retrogene
retro_mmul_89,
Monodelphis domestica ENSMODG00000017329 ortholog_one2one 1 retrogene
retro_mdom_1713,
Mustela putorius furo ENSMPUG00000011008 ortholog_one2one 1 retrogene
retro_mputfur_1377,
Mus musculus ENSMUSG00000015092 ortholog_one2one 3 retrogenes
retro_mmus_3324, retro_mmus_688, retro_mmus_809,
Rattus norvegicus ENSRNOG00000016272 ortholog_one2one 4 retrogenes
retro_rnor_1407, retro_rnor_2005, retro_rnor_2007, retro_rnor_2616,
Sorex araneus ENSSARG00000007191 possible_ortholog 1 retrogene
retro_sara_39,
Tupaia belangeri ENSTBEG00000014060 ortholog_one2one 4 retrogenes
retro_tbel_1404, retro_tbel_1950, retro_tbel_3538, retro_tbel_967,
Tursiops truncatus ENSTTRG00000002668 ortholog_one2one 2 retrogenes
retro_ttru_165, retro_ttru_894,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_635 75.49 82.79
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Download FASTA sequences of all ENSEEUG00000009565 retrocopies