Parental gene:

Tmed10, ENSRNOG00000007901

Aliases:Tmed10, Tmp21
Description:Transmembrane emp24 domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q63584]
Organism:Rat (Rattus norvegicus)
Coordinates:6:116347917..116383215(+)


>ENSRNOG00000007901
ATGTCTGGTTTGTCTGGCCCACTATCCTGGCCTGGCCCTCTCCTATCCGCCTTGCTCTTTCTGTTCCTTCTCGGCCCCAG
CTCGGTCCTCGGCATCTCCTTCCATCTACCCGTGAACTCTCGGAAGTGTCTCCGCGAGGAGATCCACAAAGACTTGCTGG
TTACGGGCGCGTACGAGATCACCGACCAGTCTGGGGGCGCTGGCGGCCTGCGCACCCACCTCAAGATCACAGATTCTGCT
GGCCATATTCTGTATGCCAAAGAGGATGCAACTAAAGGGAAGTTTGCCTTTACCACAGAAGACTATGACATGTTTGAAGT
ATGCTTTGAGAGCAAGGGAACAGGGCGGATACCTGACCAACTCGTGATTCTAGACATGAAGCATGGAGTAGAGGCGAAAA
ATTATGAAGAGATCGCAAAAGTTGAGAAACTCAAACCACTGGAGGTGGAGCTACGGCGGCTCGAGGACCTTTCAGAGTCT
ATTGTTAACGACTTTGCCTACATGAAGAAGCGGGAAGAGGAGATGAGGGACACCAACGAGTCCACAAACACCCGCGTCCT
GTACTTCAGCATCTTTTCCATGTTCTGCCTCATTGGACTAGCCACCTGGCAGGTCTTCTACCTGCGTCGCTTCTTCAAGG
CCAAGAAGTTGATAGAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 52 .05 RPM
SRP017611_kidney 89 .39 RPM
SRP017611_liver 76 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016899 ortholog_one2one 1 retrogene
retro_acar_187,
Callithrix jacchus ENSCJAG00000020627 ortholog_one2one 2 retrogenes
retro_cjac_1409, retro_cjac_4223,
Dasypus novemcinctus ENSDNOG00000019851 ortholog_one2one 1 retrogene
retro_dnov_1225,
Echinops telfairi ENSETEG00000010607 possible_ortholog 1 retrogene
retro_etel_1798,
Homo sapiens ENSG00000170348 ortholog_one2one 2 retrogenes
retro_hsap_2701, retro_hsap_4014,
Gorilla gorilla ENSGGOG00000007453 ortholog_one2one 1 retrogene
retro_ggor_2696,
Myotis lucifugus ENSMLUG00000017125 ortholog_one2many 2 retrogenes
retro_mluc_2079, retro_mluc_2093,
Macaca mulatta ENSMMUG00000015168 ortholog_one2one 2 retrogenes
retro_mmul_2316, retro_mmul_885,
Mus musculus ENSMUSG00000021248 ortholog_one2one 2 retrogenes
retro_mmus_1093, retro_mmus_649,
Nomascus leucogenys ENSNLEG00000016453 ortholog_one2one 2 retrogenes
retro_nleu_2897, retro_nleu_2963,
Oryctolagus cuniculus ENSOCUG00000004669 ortholog_one2one 1 retrogene
retro_ocun_875,
Pongo abelii ENSPPYG00000029389 ortholog_one2one 1 retrogene
retro_pabe_3296,
Pan troglodytes ENSPTRG00000006552 ortholog_one2one 2 retrogenes
retro_ptro_1823, retro_ptro_2724,
Ictidomys tridecemlineatus ENSSTOG00000007392 ortholog_one2one 1 retrogene
retro_itri_362,
Vicugna pacos ENSVPAG00000003089 ortholog_one2one 1 retrogene
retro_vpac_573,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1729 54.05 100.00
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2. retro_rnor_2031 79.72 95.89
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Download FASTA sequences of all ENSRNOG00000007901 retrocopies