Parental gene: | RBBP7, ENSPTRG00000021702 |
| Aliases: | None |
| Description: | retinoblastoma binding protein 7 [Source:HGNC Symbol;Acc:9890] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | X:16975034..17000425(-) |
>ENSPTRG00000021702
TCAGTGTTTGAAGATACTGTGGAGGAGCGTGTCATCAATGAAGAATATAAAATCTGGAAGAAGAATACACCGTTTCTATA
TGACCTGGTTATGACCCATGCTCTTCAGTGGCCCAGTCTTACCGTTCAGTGGCTTCCTGAAGTGACTAAACCTGAAGGAA
AAGATTATGCCCTTCATTGGCTAGTGCTGGGGACTCATACGTCTGATGAGCAGAATCATCTGGTGGTTGCTCGAGTACAT
ATTCCCAATGATGATGCACAGTTTGATGCTTCCCATTGTGACAGTGACAAGGGTGAATTTGGTGGCTTTGGTTCTGTAAC
AGGAAAAATTGAATGTGAAATTAAAATCAATCACGAAGGAGAAGTAAACCGTGCTCGTTACATGCCGCAGAATCCTCACA
TCATTGCTACAAAAACACCATCTTCTGATGTGTTGGTTTTTGACTATACAAAACACCCTGCTAAACCAGACCCAAGTGGA
GAATGTAATCCTGATCTCAGATTAAGAGGTCACCAGAAGGAAGGCTATGGTCTCTCCTGGAATTCAAATTTGAGTGGACA
TCTCCTAAGTGCATCTGATGACCATACTGTTTGTCTGTGGGATATAAACGCAGGACCAAAAGAAGGCAAAATTGTGGATG
CTAAAGCCATCTTTACTGGCCACTCAGCTGTTGTAGAGGATGTGGCCTGGCACCTGCTGCACGAGTCATTGTTTGGATCT
GTTGCTGATGATCAGAAACTTATGATATGGGACACCAGGTCCAATACCACCTCCAAGCCGAGCCACTTGGTGGATGCGCA
CACTGCCGAAGTCAACTGCCTCTCATTCAATCCCTACAGCGAATTTATTCTAGCCACCGGCTCTGCGGATAAGACCGTAG
CTTTATGGGATCTGCGTAACTTAAAATTAAAACTCCATACCTTCGAATCTCATAAAGATGAAATTTTCCAGGTCCACTGG
TCTCCACATAATGAAACTATTCTGGCTTCAAGTGGTACTGACCGCCGCCTGAATGTGTGGGATTTAAGTAAAATTGGGGA
AGAACAATCAGCAGAAGATGCAGAAGATGGGCCTCCAGAACTCCTGTTTATTCATGGAGGACACACTGCTAAGATTTCAG
ATTTTAGCTGGAACCCCAATGAGCCTTGGGTCATTTGCTCAGTGTCTGAGGATAACATCATGCAGATATGGCAAATGGCT
GAAAATATTTACAATGATGAAGAGTCAGATGTCACGACATCCGAACTGGAGGGACAAGGATCT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 36 .30 RPM |
| SRP007412_cerebellum | 32 .34 RPM |
| SRP007412_heart | 45 .09 RPM |
| SRP007412_kidney | 48 .41 RPM |
| SRP007412_liver | 28 .35 RPM |
| SRP007412_testis | 63 .76 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002820 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031353 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000000683 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014995 | ortholog_one2one | 1 retrogene | |
| Petromyzon marinus | ENSPMAG00000007189 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001711 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000005157 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000008079 | ortholog_one2one | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000010151 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000002385 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_896 | 81.65 | 100.00 | Please wait, loading  |
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| 2. | retro_ptro_1802 | 65.77 | 52.02 | Please wait, loading |
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| 3. | retro_ptro_1909 | 83.40 | 58.67 | Please wait, loading |
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| 4. | retro_ptro_2226 | 85.99 | 100.00 | Please wait, loading |
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| 5. | retro_ptro_2987 | 78.97 | 64.37 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000021702 retrocopies