Parental gene:

C9orf78, ENSPTRG00000021465

Aliases:None
Description:chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:129039470..129047497(-)


>ENSPTRG00000021465
ATGCCGGTCGTCCGGAAGATTTTCCGTCGCCGCCGGGGCGACTCGGAGTCAGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACCAGAGAGGTACAGAACTTGAGGAAGAGGCCCAACGGGGTGAGTGCTGTGGCCTTGCTGG
TGGGAGAGAAGGTACAAGAGGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGTATGGTGGATATGAAG
AAACTGAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAGGAGGACCTGCACCTGGGGACATCGTTTTCTGCAGAAACCAA
CCGAAGGGATGAGGATGCAGACATGATGAAGTACATTGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACATGAGG
AACAGAAAGTTAAGCCAAAGAATGCAGAGGACTGTCTTTATGAACTTCCAGAAAACATCCGCGTTTCCTCAGCAAAGAAG
ACCGAGGAGATGCTTTCCAACCAGATGCTGAGTGGCATTCCTGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAATAT
CATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGCGAGACCTCCTTCGTGC
CTACCAACATGGCTGTGAATTACGTGCAGCACAACAGATTTTATCATGAGGAGCTCAACGCGCCCATACGGAGAAACAAA
GAAGAGCCCAAGGCCCGGCCCTTGAGAGTAGGCGACACGGAGAAGCCAGAGCCTGAGCGGTCCCCTCCTAACCGCAAGCG
TCCTGCTAACGAGAAGGCAACTGATGACTATCATTATGAGAAGTTCAAGAAAATGAATAGGCGGTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 39 .65 RPM
SRP007412_cerebellum 76 .32 RPM
SRP007412_heart 39 .43 RPM
SRP007412_kidney 46 .29 RPM
SRP007412_liver 37 .58 RPM
SRP007412_testis 106 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000019979 possible_ortholog 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2one 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Callithrix jacchus ENSCJAG00000020318 ortholog_one2one 3 retrogenes
retro_cjac_1757, retro_cjac_2299, retro_cjac_2778,
Dasypus novemcinctus ENSDNOG00000019214 ortholog_one2one 1 retrogene
retro_dnov_1540,
Homo sapiens ENSG00000136819 ortholog_one2one 3 retrogenes
retro_hsap_2872, retro_hsap_2913, retro_hsap_320,
Gorilla gorilla ENSGGOG00000013358 ortholog_one2one 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_one2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Macaca mulatta ENSMMUG00000003795 ortholog_one2one 2 retrogenes
retro_mmul_1460, retro_mmul_1870,
Monodelphis domestica ENSMODG00000006832 ortholog_one2one 1 retrogene
retro_mdom_518,
Nomascus leucogenys ENSNLEG00000017658 ortholog_one2one 3 retrogenes
retro_nleu_1763, retro_nleu_614, retro_nleu_823,
Otolemur garnettii ENSOGAG00000009770 ortholog_one2one 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 ortholog_one2one 1 retrogene
retro_pabe_2426,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2one 1 retrogene
retro_shar_746,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_258 54.27 67.82
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2. retro_ptro_1943 69.12 69.55
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3. retro_ptro_1969 75.60 72.32
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Download FASTA sequences of all ENSPTRG00000021465 retrocopies