Parental gene:

C9orf78, ENSDNOG00000019214

Aliases:None
Description:chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3305:12813..17726(-)


>ENSDNOG00000019214
GCTGTGGCCCTGTTGGTGGGAGAGAAAGTGCAGGAAGAGACCACCCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGG
TATGGTGGACATGAAGAAATTGAAGGAGAGGGGCAAAGATAAGATCAGTGAAGAGGAAGACCTCCACCTGGGGACATCAT
TTTCTGCAGAAACCAACCGAAGGGATGAGGATGCAGACATGATGAAGTATATTGAAACAGAGCTTAAGAAAAGGAAAGGG
ATTGTGGAACACGAGGAACAAAAAGTAAAGCCGAAGAATGCAGAGGATTGTCTTTATGAGCTTCCAGAAAATATCCGTGT
TTCCTCAGCAAAGAAAACCGAGGAGATGCTTTCGAACCAGATGTTGAGTGGTATCCCTGAGGTGGACCTTGGCATCGATG
CTAAAATTAAAAATATCATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGT
GAGACATCCTTTGTGCTCACTATGGCTGTAAATTATGTACAGCACAACCGATTTTATCATGAAGAGCTCAATGCCCCCAT
ACGGAGAAACAAGGAAGAACCCAAAGCCCGGCCTTTGAGAGTGGGTGACACAGAGAAGCCAGAGCCTGAGCGGTCCCCTC
CTAACCGCAAGCGTCCTGCTAATGAGAAGGCCACCGATGACTATCACTATGAAAAGTTCAAGAAGATGAACAGGCGGTAC
TGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 41 .42 RPM
SRP012922_cerebellum 31 .62 RPM
SRP012922_heart 18 .56 RPM
SRP012922_kidney 29 .84 RPM
SRP012922_liver 21 .98 RPM
SRP012922_lung 49 .48 RPM
SRP012922_quadricep_muscle 17 .31 RPM
SRP012922_spleen 54 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000019979 possible_ortholog 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2one 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Callithrix jacchus ENSCJAG00000020318 ortholog_one2one 3 retrogenes
retro_cjac_1757, retro_cjac_2299, retro_cjac_2778,
Homo sapiens ENSG00000136819 ortholog_one2one 3 retrogenes
retro_hsap_2872, retro_hsap_2913, retro_hsap_320,
Gorilla gorilla ENSGGOG00000013358 ortholog_one2one 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_one2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Macaca mulatta ENSMMUG00000003795 ortholog_one2one 2 retrogenes
retro_mmul_1460, retro_mmul_1870,
Monodelphis domestica ENSMODG00000006832 ortholog_one2one 1 retrogene
retro_mdom_518,
Nomascus leucogenys ENSNLEG00000017658 ortholog_one2one 3 retrogenes
retro_nleu_1763, retro_nleu_614, retro_nleu_823,
Otolemur garnettii ENSOGAG00000009770 ortholog_one2one 1 retrogene
retro_ogar_1015,
Pongo abelii ENSPPYG00000019685 ortholog_one2one 1 retrogene
retro_pabe_2426,
Pan troglodytes ENSPTRG00000021465 ortholog_one2one 3 retrogenes
retro_ptro_1943, retro_ptro_1969, retro_ptro_258,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2one 1 retrogene
retro_shar_746,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1540 80.57 86.67
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Download FASTA sequences of all ENSDNOG00000019214 retrocopies