Parental gene:

SET, ENSPTRG00000021436

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:9:127851167..127864173(+)


>ENSPTRG00000021436
ATGGCCCCTAAACGCCAGTCTCCACTCCCGCCTCAAAAGAAGAAACCAAGACCACCTCCTGCTCTGGGACCGGAGGAGAC
ATCGGCCTCTGCAGGCTTGCCGAAGAAGGGAGAAAAAGAACAGCAAGAAGCGATTGAACACATTGATGAAGTACAAAATG
AAATAGACAGACTTAATGAACAAGCCAGTGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTT
TTTCAGAAGAGGTCAGAATTGATCGCCAAAATCCCGAATTTTTGGGTAACAACATTTGTCAACCATCCACAAGTGTCTGC
ACTGCTTGGGGAGGAAGACGAAGAGGCACTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAG
GTTACAGAATAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAATGAG
AGTGGTGATCCATCTTCGAAGTCCACCGAAATCAAATGGAAATCTGGAAAGGATTTGACGAAACGTTCGAGTCAAACGCA
GAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGATGCAGGTG
CTGATGAGTTAGGAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTACTACTTGGTTCCCGATATGGATGAT
GAAGAAGGAGAAGGAGAAGAAGATGATGATGATGATGAAGAGGAGGAAGGATTAGAAGATATTGACGAAGAAGGGGATGA
GGATGAAGGTGAAGAAGATGAAGATGATGATGAAGGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 127 .28 RPM
SRP007412_cerebellum 105 .86 RPM
SRP007412_heart 94 .58 RPM
SRP007412_kidney 106 .44 RPM
SRP007412_liver 75 .78 RPM
SRP007412_testis 73 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015686 possible_ortholog 7 retrogenes
retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus ENSBTAG00000020959 possible_ortholog 8 retrogenes
retro_btau_1179, retro_btau_1490, retro_btau_1519, retro_btau_1556, retro_btau_464, retro_btau_469, retro_btau_749, retro_btau_955,
Canis familiaris ENSCAFG00000032728 possible_ortholog 2 retrogenes
retro_cfam_47, retro_cfam_83,
Felis catus ENSFCAG00000005848 possible_ortholog 2 retrogenes
retro_fcat_130, retro_fcat_89,
Microcebus murinus ENSMICG00000017643 ortholog_one2one 2 retrogenes
retro_mmur_1398, retro_mmur_775,
Myotis lucifugus ENSMLUG00000014291 possible_ortholog 13 retrogenes
retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Mustela putorius furo ENSMPUG00000013069 possible_ortholog 10 retrogenes
retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Mus musculus ENSMUSG00000054766 ortholog_one2one 17 retrogenes
retro_mmus_1366, retro_mmus_1435, retro_mmus_1671, retro_mmus_1743, retro_mmus_2329, retro_mmus_2448, retro_mmus_2484, retro_mmus_2664, retro_mmus_2665, retro_mmus_3015, retro_mmus_3290, retro_mmus_345, retro_mmus_3513, retro_mmus_517, retro_mmus_887, retro_mmus_929, retro_mmus_967,
Nomascus leucogenys ENSNLEG00000017595 possible_ortholog 2 retrogenes
retro_nleu_108, retro_nleu_870,
Oryctolagus cuniculus ENSOCUG00000007501 possible_ortholog 12 retrogenes
retro_ocun_1107, retro_ocun_1110, retro_ocun_1234, retro_ocun_1311, retro_ocun_1563, retro_ocun_276, retro_ocun_407, retro_ocun_421, retro_ocun_423, retro_ocun_476, retro_ocun_859, retro_ocun_923,
Otolemur garnettii ENSOGAG00000007635 ortholog_one2one 13 retrogenes
retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii ENSPPYG00000019659 possible_ortholog 17 retrogenes
retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,
Pteropus vampyrus ENSPVAG00000003437 ortholog_one2one 2 retrogenes
retro_pvam_1198, retro_pvam_886,
Ictidomys tridecemlineatus ENSSTOG00000010546 possible_ortholog 6 retrogenes
retro_itri_1204, retro_itri_1588, retro_itri_477, retro_itri_529, retro_itri_603, retro_itri_876,
Tursiops truncatus ENSTTRG00000011605 ortholog_one2one 7 retrogenes
retro_ttru_1433, retro_ttru_1600, retro_ttru_181, retro_ttru_1901, retro_ttru_537, retro_ttru_919, retro_ttru_931,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_209 76.19 71.38
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2. retro_ptro_225 78.33 81.72
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3. retro_ptro_321 93.03 83.79
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4. retro_ptro_561 74.44 75.17
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5. retro_ptro_913 83.50 68.97
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6. retro_ptro_953 74.57 100.00
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7. retro_ptro_1232 91.04 72.76
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8. retro_ptro_1836 72.49 63.79
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9. retro_ptro_1838 94.12 81.72
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10. retro_ptro_2073 86.19 82.41
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11. retro_ptro_2085 55.74 62.41
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12. retro_ptro_2151 88.17 58.28
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13. retro_ptro_2152 88.61 81.38
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14. retro_ptro_2283 88.48 74.14
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15. retro_ptro_2965 93.29 55.86
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16. retro_ptro_3140 87.29 81.38
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Download FASTA sequences of all ENSPTRG00000021436 retrocopies