Parental gene:

NDUFA4, ENSPTRG00000018934

Aliases:None
Description:Pan troglodytes NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001079924]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:9534894..9543023(-)


>ENSPTRG00000018934
ATGCTCCGCCAGATCATCGGTCAGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTTGTATTTATTGGAACTGGAGCTAC
TGGAGCAACACTGTATCTCTTGCGTCTGGCATTGTTCAATCCAGATGTTTGTTGGGACAGAAATAACCCAGAGCCCTGGA
ACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACAGCAAGCTGAAGAAGGAACGTCCAGAT
TTCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 238 .82 RPM
SRP007412_cerebellum 80 .80 RPM
SRP007412_heart 209 .21 RPM
SRP007412_kidney 128 .12 RPM
SRP007412_liver 39 .74 RPM
SRP007412_testis 7 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002493 possible_ortholog 10 retrogenes
retro_amel_1356, retro_amel_1633, retro_amel_18, retro_amel_1800, retro_amel_1866, retro_amel_533, retro_amel_608, retro_amel_638, retro_amel_845, retro_amel_955,
Choloepus hoffmanni ENSCHOG00000012330 ortholog_one2one 1 retrogene
retro_chof_2667,
Callithrix jacchus ENSCJAG00000000748 ortholog_one2many 3 retrogenes
retro_cjac_3291, retro_cjac_36, retro_cjac_90,
Dasypus novemcinctus ENSDNOG00000011217 ortholog_one2one 12 retrogenes
retro_dnov_1874, retro_dnov_1921, retro_dnov_2015, retro_dnov_2258, retro_dnov_2566, retro_dnov_2567, retro_dnov_2641, retro_dnov_349, retro_dnov_506, retro_dnov_725, retro_dnov_744, retro_dnov_764,
Homo sapiens ENSG00000189043 ortholog_one2one 18 retrogenes
retro_hsap_1459, retro_hsap_200, retro_hsap_2374, retro_hsap_2386, retro_hsap_259, retro_hsap_2685, retro_hsap_2726, retro_hsap_285, retro_hsap_3241, retro_hsap_4067, retro_hsap_4188, retro_hsap_4292, retro_hsap_4699, retro_hsap_4700, retro_hsap_4750, retro_hsap_4856, retro_hsap_650, retro_hsap_877,
Gorilla gorilla ENSGGOG00000001437 ortholog_one2one 3 retrogenes
retro_ggor_249, retro_ggor_30, retro_ggor_567,
Microcebus murinus ENSMICG00000013999 ortholog_one2one 5 retrogenes
retro_mmur_1225, retro_mmur_1314, retro_mmur_133, retro_mmur_341, retro_mmur_696,
Myotis lucifugus ENSMLUG00000006470 possible_ortholog 6 retrogenes
retro_mluc_1778, retro_mluc_1821, retro_mluc_329, retro_mluc_450, retro_mluc_517, retro_mluc_849,
Macaca mulatta ENSMMUG00000020894 ortholog_one2many 2 retrogenes
retro_mmul_272, retro_mmul_274,
Monodelphis domestica ENSMODG00000014107 ortholog_one2one 2 retrogenes
retro_mdom_1095, retro_mdom_1593,
Oryctolagus cuniculus ENSOCUG00000029372 ortholog_one2one 1 retrogene
retro_ocun_41,
Otolemur garnettii ENSOGAG00000000358 ortholog_one2many 17 retrogenes
retro_ogar_1023, retro_ogar_1026, retro_ogar_1319, retro_ogar_1403, retro_ogar_1566, retro_ogar_1960, retro_ogar_1976, retro_ogar_2050, retro_ogar_2350, retro_ogar_2528, retro_ogar_3023, retro_ogar_3413, retro_ogar_3434, retro_ogar_3457, retro_ogar_694, retro_ogar_731, retro_ogar_997,
Pongo abelii ENSPPYG00000017780 ortholog_one2one 5 retrogenes
retro_pabe_2296, retro_pabe_24, retro_pabe_301, retro_pabe_3339, retro_pabe_678,
Tupaia belangeri ENSTBEG00000016629 ortholog_one2one 16 retrogenes
retro_tbel_1049, retro_tbel_1848, retro_tbel_2008, retro_tbel_2058, retro_tbel_2194, retro_tbel_2274, retro_tbel_2423, retro_tbel_2761, retro_tbel_3262, retro_tbel_4255, retro_tbel_4309, retro_tbel_436, retro_tbel_4380, retro_tbel_4426, retro_tbel_4719, retro_tbel_815,
Tarsius syrichta ENSTSYG00000000041 ortholog_one2one 15 retrogenes
retro_tsyr_1427, retro_tsyr_1650, retro_tsyr_1766, retro_tsyr_1948, retro_tsyr_1973, retro_tsyr_1974, retro_tsyr_198, retro_tsyr_270, retro_tsyr_425, retro_tsyr_473, retro_tsyr_492, retro_tsyr_659, retro_tsyr_685, retro_tsyr_821, retro_tsyr_937,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_182 92.59 100.00
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2. retro_ptro_219 69.05 100.00
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3. retro_ptro_235 72.73 93.83
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4. retro_ptro_473 74.07 98.77
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5. retro_ptro_766 65.48 100.00
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6. retro_ptro_993 73.42 96.30
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7. retro_ptro_1134 97.56 100.00
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8. retro_ptro_1736 74.68 96.30
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9. retro_ptro_1745 84.06 83.95
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10. retro_ptro_1811 82.93 100.00
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11. retro_ptro_1842 73.58 64.20
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12. retro_ptro_2191 79.52 100.00
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13. retro_ptro_2756 76.25 98.77
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14. retro_ptro_2844 85.71 67.90
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15. retro_ptro_2908 78.31 100.00
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16. retro_ptro_3034 70.73 100.00
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17. retro_ptro_3123 70.15 81.48
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18. retro_ptro_3165 76.92 95.06
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19. retro_ptro_3233 73.53 81.48
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Download FASTA sequences of all ENSPTRG00000018934 retrocopies