Parental gene:

NDUFA4, ENSG00000189043

Aliases:NDUFA4, CI-9k, CI-MLRQ, MLRQ
Description:NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687]
Organism:Human (Homo sapiens)
Coordinates:7:10971577..10979883(-)


>ENSG00000189043
ATGCTCCGCCAGATCATCGGTCAGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTTGTATTTATTGGAACTGGAGCTAC
TGGAGCAACACTGTATCTCTTGCGTCTGGCATTGTTCAATCCAGATGTTTGTTGGGACAGAAATAACCCAGAGCCCTGGA
ACAAACTGGGTCCCAATGATCAATACAAGTTCTACTCAGTGAATGTGGATTACAGCAAGCTGAAGAAGGAACGTCCAGAT
TTCTAA

Library Parental gene expression (RPM)
bodymap2_adipose 56 .73 RPM
bodymap2_adrenal 81 .49 RPM
bodymap2_brain 204 .12 RPM
bodymap2_breast 82 .72 RPM
bodymap2_colon 80 .77 RPM
bodymap2_heart 501 .83 RPM
bodymap2_kidney 130 .35 RPM
bodymap2_liver 110 .92 RPM
bodymap2_lung 105 .89 RPM
bodymap2_lymph_node 81 .06 RPM
bodymap2_ovary 64 .00 RPM
bodymap2_prostate 120 .39 RPM
bodymap2_skeletal_muscle 121 .57 RPM
bodymap2_testis 80 .47 RPM
bodymap2_thyroid 114 .85 RPM
bodymap2_white_blood_cells 64 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002493 possible_ortholog 10 retrogenes
retro_amel_1356, retro_amel_1633, retro_amel_18, retro_amel_1800, retro_amel_1866, retro_amel_533, retro_amel_608, retro_amel_638, retro_amel_845, retro_amel_955,
Choloepus hoffmanni ENSCHOG00000012330 ortholog_one2one 1 retrogene
retro_chof_2667,
Callithrix jacchus ENSCJAG00000000748 ortholog_one2many 3 retrogenes
retro_cjac_3291, retro_cjac_36, retro_cjac_90,
Dasypus novemcinctus ENSDNOG00000011217 ortholog_one2one 12 retrogenes
retro_dnov_1874, retro_dnov_1921, retro_dnov_2015, retro_dnov_2258, retro_dnov_2566, retro_dnov_2567, retro_dnov_2641, retro_dnov_349, retro_dnov_506, retro_dnov_725, retro_dnov_744, retro_dnov_764,
Homo sapiens ENSG00000185633 within_species_paralog 2 retrogenes
retro_hsap_4698, retro_hsap_4857,
Gorilla gorilla ENSGGOG00000001437 ortholog_one2one 3 retrogenes
retro_ggor_249, retro_ggor_30, retro_ggor_567,
Microcebus murinus ENSMICG00000013999 ortholog_one2one 5 retrogenes
retro_mmur_1225, retro_mmur_1314, retro_mmur_133, retro_mmur_341, retro_mmur_696,
Myotis lucifugus ENSMLUG00000006470 possible_ortholog 6 retrogenes
retro_mluc_1778, retro_mluc_1821, retro_mluc_329, retro_mluc_450, retro_mluc_517, retro_mluc_849,
Macaca mulatta ENSMMUG00000020894 ortholog_one2many 2 retrogenes
retro_mmul_272, retro_mmul_274,
Monodelphis domestica ENSMODG00000014107 ortholog_one2one 2 retrogenes
retro_mdom_1095, retro_mdom_1593,
Oryctolagus cuniculus ENSOCUG00000029372 ortholog_one2one 1 retrogene
retro_ocun_41,
Otolemur garnettii ENSOGAG00000000358 ortholog_one2many 17 retrogenes
retro_ogar_1023, retro_ogar_1026, retro_ogar_1319, retro_ogar_1403, retro_ogar_1566, retro_ogar_1960, retro_ogar_1976, retro_ogar_2050, retro_ogar_2350, retro_ogar_2528, retro_ogar_3023, retro_ogar_3413, retro_ogar_3434, retro_ogar_3457, retro_ogar_694, retro_ogar_731, retro_ogar_997,
Pongo abelii ENSPPYG00000017780 ortholog_one2one 5 retrogenes
retro_pabe_2296, retro_pabe_24, retro_pabe_301, retro_pabe_3339, retro_pabe_678,
Pan troglodytes ENSPTRG00000018934 ortholog_one2one 19 retrogenes
retro_ptro_1134, retro_ptro_1736, retro_ptro_1745, retro_ptro_1811, retro_ptro_182, retro_ptro_1842, retro_ptro_219, retro_ptro_2191, retro_ptro_235, retro_ptro_2756, retro_ptro_2844, retro_ptro_2908, retro_ptro_3034, retro_ptro_3123, retro_ptro_3165, retro_ptro_3233, retro_ptro_473, retro_ptro_766, retro_ptro_993,
Tupaia belangeri ENSTBEG00000016629 ortholog_one2one 16 retrogenes
retro_tbel_1049, retro_tbel_1848, retro_tbel_2008, retro_tbel_2058, retro_tbel_2194, retro_tbel_2274, retro_tbel_2423, retro_tbel_2761, retro_tbel_3262, retro_tbel_4255, retro_tbel_4309, retro_tbel_436, retro_tbel_4380, retro_tbel_4426, retro_tbel_4719, retro_tbel_815,
Tarsius syrichta ENSTSYG00000000041 ortholog_one2one 15 retrogenes
retro_tsyr_1427, retro_tsyr_1650, retro_tsyr_1766, retro_tsyr_1948, retro_tsyr_1973, retro_tsyr_1974, retro_tsyr_198, retro_tsyr_270, retro_tsyr_425, retro_tsyr_473, retro_tsyr_492, retro_tsyr_659, retro_tsyr_685, retro_tsyr_821, retro_tsyr_937,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_200 92.59 100.00
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2. retro_hsap_259 71.08 100.00
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3. retro_hsap_285 74.03 93.83
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4. retro_hsap_650 76.54 98.77
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5. retro_hsap_877 70.73 100.00
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6. retro_hsap_1459 72.15 96.30
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7. retro_hsap_2374 73.17 100.00
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8. retro_hsap_2386 81.16 83.95
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9. retro_hsap_2685 82.93 100.00
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10. retro_hsap_2726 79.25 64.20
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11. retro_hsap_3241 79.52 100.00
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12. retro_hsap_4067 78.75 98.77
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13. retro_hsap_4188 85.71 67.90
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14. retro_hsap_4292 81.82 80.25
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15. retro_hsap_4699 73.53 81.48
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16. retro_hsap_4700 73.13 81.48
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17. retro_hsap_4750 79.31 70.37
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18. retro_hsap_4856 73.53 81.48
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Download FASTA sequences of all ENSG00000189043 retrocopies