Parental gene:

LSM6, ENSPTRG00000016488

Aliases:None
Description:LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17017]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:4:149161098..149175468(+)


>ENSPTRG00000016488
ATGAGTCTTCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAAATCATCGGACGACCAGTTGTGGTAAAATTAAATTCTGG
AGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAATATGTAAATG
GACAACTGAAGAATAAGTATGGGGATGCATTTATCCGAGGAAACAATGTGTTGTACATCAGTACACAGAAGAGACGGATG
TGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .02 RPM
SRP007412_cerebellum 9 .93 RPM
SRP007412_heart 3 .96 RPM
SRP007412_kidney 5 .47 RPM
SRP007412_liver 6 .12 RPM
SRP007412_testis 14 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002482 ortholog_one2one 4 retrogenes
retro_cjac_1173, retro_cjac_1278, retro_cjac_3176, retro_cjac_3248,
Dasypus novemcinctus ENSDNOG00000009322 ortholog_one2one 5 retrogenes
retro_dnov_1118, retro_dnov_176, retro_dnov_2092, retro_dnov_301, retro_dnov_664,
Microcebus murinus ENSMICG00000000571 ortholog_one2one 1 retrogene
retro_mmur_1563,
Macaca mulatta ENSMMUG00000005524 ortholog_one2one 2 retrogenes
retro_mmul_668, retro_mmul_991,
Mus musculus ENSMUSG00000031683 ortholog_one2one 2 retrogenes
retro_mmus_820, retro_mmus_956,
Otolemur garnettii ENSOGAG00000026665 possible_ortholog 1 retrogene
retro_ogar_233,
Pongo abelii ENSPPYG00000015105 ortholog_one2one 1 retrogene
retro_pabe_1994,
Tarsius syrichta ENSTSYG00000012759 ortholog_one2one 4 retrogenes
retro_tsyr_1332, retro_tsyr_1727, retro_tsyr_340, retro_tsyr_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1545 67.90 100.00
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Download FASTA sequences of all ENSPTRG00000016488 retrocopies