Parental gene: | LSM6, ENSCJAG00000002482 |
| Aliases: | None |
| Description: | LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17017] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 3:46728724..46753673(-) |
>ENSCJAG00000002482
ATGAGTCTTCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAAATCATTGGACGACCGGTTGTGGTAAAATTAAATTCTGG
AGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAGGAATATGTAAATG
GACAACTGAAGAATAAGTATGGGGACGCATTTATCCGAGGAAACAATGTGTTGTACATCAGTACACAGAAGAGAAGGATG
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_colon | 6 .57 RPM |
| SRP051959_heart | 5 .79 RPM |
| SRP051959_kidney | 5 .77 RPM |
| SRP051959_liver | 6 .41 RPM |
| SRP051959_lung | 8 .82 RPM |
| SRP051959_lymph_node | 8 .81 RPM |
| SRP051959_skeletal_muscle | 5 .24 RPM |
| SRP051959_spleen | 10 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002705 | within_species_paralog | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000009322 | ortholog_one2one | 5 retrogenes | |
| Microcebus murinus | ENSMICG00000000571 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005524 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000031683 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000026665 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000015105 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016488 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000012759 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1173 | 62.65 | 100.00 | Please wait, loading  |
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| 2. | retro_cjac_1278 | 65.43 | 100.00 | Please wait, loading |
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| 3. | retro_cjac_3176 | 91.36 | 98.75 | Please wait, loading |
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| 4. | retro_cjac_3248 | 90.12 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSCJAG00000002482 retrocopies