Parental gene:

NDUFAB1, ENSPTRG00000007889

Aliases:None
Description:Pan troglodytes NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa (NDUFAB1), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001071820]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:16:23686040..23702014(-)


>ENSPTRG00000007889
ATGGCGTCTCGTGTCCTTTCAGCTTATGTCAGCCGCCTGCCCGCGGCCTTTGCGCCGCTGCCCCGGGTCCGGATGCTGGC
CGTGGCCCGGCCTCTCAGCACCGCTCTGTGCTCCGCGGGGACCCAGACGAGGCTCGGGACTTTGCAGCCGGCCTTAGTGC
TCGCGCAGGTTCCTGGTAGAGTTACACAGTTGTGCCGCCAGTATAGCGACATGCCTCCTTTGACGTTAGAGGGCATCCAG
GACCGTGTTCTTTACGTATTGAAACTCTATGACAAGATTGACCCGGAGAAGCTTTCAGTAAATTCTCATTTTATGAAAGA
CCTGGGCTTAGACAGTTTGGACCAAGTGGAGATTATCATGGCCATGGAAGACGAATTTGGGTTTGAAATTCCTGATATAG
ATGCTGAAAAGTTAATGTGTCCACAAGAAATTGTAGATTACATTGCAGATAAGAAGGATGTATATGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 44 .36 RPM
SRP007412_cerebellum 18 .39 RPM
SRP007412_heart 83 .88 RPM
SRP007412_kidney 44 .75 RPM
SRP007412_liver 23 .31 RPM
SRP007412_testis 14 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014304 possible_ortholog 1 retrogene
retro_amel_1692,
Canis familiaris ENSCAFG00000017667 possible_ortholog 3 retrogenes
retro_cfam_1738, retro_cfam_1821, retro_cfam_450,
Callithrix jacchus ENSCJAG00000020616 ortholog_one2one 2 retrogenes
retro_cjac_2635, retro_cjac_3099,
Cavia porcellus ENSCPOG00000012038 ortholog_one2one 2 retrogenes
retro_cpor_728, retro_cpor_767,
Felis catus ENSFCAG00000013241 possible_ortholog 3 retrogenes
retro_fcat_1104, retro_fcat_1181, retro_fcat_2012,
Homo sapiens ENSG00000004779 ortholog_one2one 1 retrogene
retro_hsap_3484,
Gorilla gorilla ENSGGOG00000006320 ortholog_one2one 1 retrogene
retro_ggor_2349,
Macropus eugenii ENSMEUG00000012681 ortholog_one2one 3 retrogenes
retro_meug_1780, retro_meug_303, retro_meug_830,
Microcebus murinus ENSMICG00000007778 ortholog_one2one 2 retrogenes
retro_mmur_1193, retro_mmur_120,
Macaca mulatta ENSMMUG00000020522 ortholog_one2many 1 retrogene
retro_mmul_101,
Monodelphis domestica ENSMODG00000016352 ortholog_one2one 1 retrogene
retro_mdom_389,
Mus musculus ENSMUSG00000030869 ortholog_one2one 6 retrogenes
retro_mmus_1724, retro_mmus_2073, retro_mmus_2188, retro_mmus_2947, retro_mmus_3094, retro_mmus_3332,
Otolemur garnettii ENSOGAG00000005562 ortholog_one2one 2 retrogenes
retro_ogar_2916, retro_ogar_325,
Pongo abelii ENSPPYG00000007192 ortholog_one2one 1 retrogene
retro_pabe_2879,
Rattus norvegicus ENSRNOG00000018129 ortholog_one2many 2 retrogenes
retro_rnor_1353, retro_rnor_2058,
Ictidomys tridecemlineatus ENSSTOG00000024657 ortholog_one2one 2 retrogenes
retro_itri_281, retro_itri_916,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2358 62.66 96.79
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Download FASTA sequences of all ENSPTRG00000007889 retrocopies