Parental gene:

SNW1, ENSPTRG00000006587

Aliases:SNW1, SKIIP
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:14:77017629..77062551(-)


>ENSPTRG00000006587
ATGGCGCTCACCAGCTTTTTACCTGCACCTACTCAGCTATCTCAGGACCAGCTTGAGGCTGAAGAAAAGGCAAGATCCCA
GAGATCGCGGCAGACCTCACTGGTCTCCTCCCGAAGAGAACCTCCCCCGTACGGATACCGGAAAGGCTGGATACCTCGGT
TATTAGAGGATTTTGGAGATGGAGGTGCTTTTCCAGAGATCCATGTGGCCCAGTATCCACTGGATATGGGACGAAAGAAA
AAAATGTCGAATGCGCTGGCCATTCAGGTGGATTCTGAAGGAAAAATTAAATATGATGCAATTGCTCGACAAGGACAGTC
AAAAGACAAGGTCATTTATAGCAAATACACTGACCTGGTTCCAAAGGAGGTTATGAATGCAGATGATCCAGACCTGCAAA
GGCCTGATGAAGAAGCTATTAAAGAGATAACAGAAAAGACAAGAGTAGCCTTAGAAAAATCTGTATCACAGAAGGTCGCC
GCAGCCATGCCAGTTCGAGCAGCTGACAAACTGGCTCCTGCTCAGTATATCCGATACACACCATCTCAGCAAGGAGTGGC
ATTCAACTCTGGAGCTAAACAGAGGGTTATTCGGATGGTAGAAATGCAGAAAGATCCAATGGAGCCTCCAAGGTTCAAGA
TTAATAAGAAAATTCCCCGGGGACCACCTTCTCCTCCTGCGCCTGTCATGCATTCTCCTAGCCGAAAGATGACTGTAAAG
GAACAACAAGAGTGGAAGATTCCTCCTTGTATTTCTAACTGGAAAAATGCAAAGGGTTATACAATTCCATTAGACAAACG
TCTGGCTGCTGATGGAAGAGGACTACAGACAGTACACATAAATGAAAATTTCGCCAAATTGGCAGAAGCCCTCTACATTG
CCGATCGGAAGGCTCGTGAAGCTGTGGAAATGCGTGCCCAAGTAGAGAGAAAAATGGCTCAGAAAGAAAAGGAAAAACAT
GAAGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGGGAGAGAAGAGCTGGGATCAAAACTCATGTGGAAAAAGAGGATGG
GGAGGCACGTGAGAGGGATGAAATCCGGCATGACAGGCGAAAAGAGAGACAGCATGACCGGAATCTTTCCAGGGCAGCTC
CTGATAAGAGGTCGAAACTTCAGAGAAATGAAAATCGGGATATCAGTGAAGTTATTGCTCTCGGTGTTCCTAATCCTCGG
ACTTCCAATGAAGTTCAATATGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGTGGAGAAGA
TGAAATTTATAATGTTTATGATCAAGCCTGGAGAGGTGGTAAAGATATGGCCCAGAGTATTTATAGGCCCAGTAAAAATC
TGGACAAGGACATGTATGGTGATGACCTAGAAGCCAGAATAAAGACCAACAGATTTGTTCCCGACAAGGAGTTTTCTGGT
TCAGACCGTAGACAGAGAGGCCGAGAAGGACCAGTTCAGTTTGAGGAAGATCCTTTTGGTTTGGACAAGTTTTTGGAAGA
AGCCAAACAGCATGGTGGCTCTAAAAGACCCTCAGATAGCAGCCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGAGGA
GGAAGGAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 28 .90 RPM
SRP007412_cerebellum 52 .23 RPM
SRP007412_heart 38 .74 RPM
SRP007412_kidney 34 .23 RPM
SRP007412_liver 35 .45 RPM
SRP007412_testis 206 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003976 ortholog_one2one 2 retrogenes
retro_amel_163, retro_amel_912,
Canis familiaris ENSCAFG00000030409 ortholog_one2many 1 retrogene
retro_cfam_195,
Dipodomys ordii ENSDORG00000012380 ortholog_one2one 3 retrogenes
retro_dord_693, retro_dord_781, retro_dord_782,
Felis catus ENSFCAG00000001637 ortholog_one2one 1 retrogene
retro_fcat_635,
Homo sapiens ENSG00000100603 ortholog_one2one 1 retrogene
retro_hsap_174,
Gorilla gorilla ENSGGOG00000026016 ortholog_one2one 1 retrogene
retro_ggor_257,
Loxodonta africana ENSLAFG00000003482 ortholog_one2one 2 retrogenes
retro_lafr_474, retro_lafr_787,
Myotis lucifugus ENSMLUG00000005228 ortholog_one2many 2 retrogenes
retro_mluc_387, retro_mluc_805,
Monodelphis domestica ENSMODG00000005252 ortholog_one2one 1 retrogene
retro_mdom_1841,
Mustela putorius furo ENSMPUG00000008724 ortholog_one2one 1 retrogene
retro_mputfur_551,
Mus musculus ENSMUSG00000021039 ortholog_one2one 2 retrogenes
retro_mmus_1022, retro_mmus_387,
Nomascus leucogenys ENSNLEG00000016771 ortholog_one2one 1 retrogene
retro_nleu_982,
Ochotona princeps ENSOPRG00000007568 ortholog_one2one 1 retrogene
retro_opri_737,
Pongo abelii ENSPPYG00000006031 ortholog_one2one 1 retrogene
retro_pabe_454,
Sorex araneus ENSSARG00000002279 ortholog_one2one 3 retrogenes
retro_sara_403, retro_sara_568, retro_sara_727,
Taeniopygia guttata ENSTGUG00000012340 ortholog_one2one 2 retrogenes
retro_tgut_15, retro_tgut_30,
Tarsius syrichta ENSTSYG00000010951 ortholog_one2one 1 retrogene
retro_tsyr_1871,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_165 86.38 100.00
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Download FASTA sequences of all ENSPTRG00000006587 retrocopies