Parental gene:

IDI1, ENSPTRG00000002239

Aliases:None
Description:isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:5387]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:10:1124915..1135315(-)


>ENSPTRG00000002239
ATGTGGCGTGGACTGGCGCTGGCGAGAGCGATTGGCTGCGCGGCCCGGGGGTGGGGCCAGTGGGCGGTGCGCGCCGCGGA
CTGTGCTCAAAGCGGGCGCTCTCCGGGACCGGCGGGTGTCTGTGGCCGGAGGCTGATCAGTGTTCTAGAACAGATCAGAC
ATTTTGTAATGATGCCTGAAATAAACACTAACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTT
ATTGATGAAAATGACAATAAAATTGGAGCTGAGACCAAGAAGAACTGTCACCTGAACGAGAACATTGAGAAAGGATTATT
GCATCGAGCTTTTAGCGTCTTCTTATTCAACACCGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCT
TTCCAGGTTGTTTTACGAATACGTGTTGTAGTCATCCATTAAGCAATCCAGCCGAGCTTGAGGAAAGTGACGCCCTTGGA
GTGAGGCGAGCAGCACAGAGACGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTA
TTTAACACGAATTCACTACAAAGCTCAGTCTGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTGGTGAGGA
AGAATGTAACTTTGAATCCAGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAACTAAAAGAACTTCTG
AAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTAAAATTATTGCAGCGACTTTTCTCTTTAAATGGTGGGA
TAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATATACAGAATG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .80 RPM
SRP007412_cerebellum 13 .80 RPM
SRP007412_heart 7 .61 RPM
SRP007412_kidney 7 .56 RPM
SRP007412_liver 8 .71 RPM
SRP007412_testis 12 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008483 ortholog_one2one 3 retrogenes
retro_cjac_2083, retro_cjac_2591, retro_cjac_2820,
Erinaceus europaeus ENSEEUG00000012555 ortholog_one2one 3 retrogenes
retro_eeur_188, retro_eeur_198, retro_eeur_61,
Homo sapiens ENSG00000067064 ortholog_one2one 3 retrogenes
retro_hsap_2161, retro_hsap_2444, retro_hsap_4053,
Gorilla gorilla ENSGGOG00000000934 ortholog_one2one 3 retrogenes
retro_ggor_1521, retro_ggor_1717, retro_ggor_2722,
Macaca mulatta ENSMMUG00000017115 ortholog_one2one 3 retrogenes
retro_mmul_2340, retro_mmul_632, retro_mmul_899,
Monodelphis domestica ENSMODG00000005998 ortholog_one2one 5 retrogenes
retro_mdom_1107, retro_mdom_1692, retro_mdom_1697, retro_mdom_1724, retro_mdom_547,
Mus musculus ENSMUSG00000058258 ortholog_one2one 4 retrogenes
retro_mmus_2032, retro_mmus_2660, retro_mmus_417, retro_mmus_552,
Nomascus leucogenys ENSNLEG00000013594 ortholog_one2one 3 retrogenes
retro_nleu_1810, retro_nleu_2777, retro_nleu_2804,
Oryctolagus cuniculus ENSOCUG00000007493 ortholog_one2many 1 retrogene
retro_ocun_267,
Ochotona princeps ENSOPRG00000008692 ortholog_one2one 2 retrogenes
retro_opri_694, retro_opri_755,
Pongo abelii ENSPPYG00000002039 ortholog_one2one 2 retrogenes
retro_pabe_1783, retro_pabe_3327,
Ictidomys tridecemlineatus ENSSTOG00000023260 ortholog_one2many 1 retrogene
retro_itri_118,
Tursiops truncatus ENSTTRG00000011174 ortholog_one2one 1 retrogene
retro_ttru_255,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1412 68.37 74.30
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2. retro_ptro_1647 89.25 65.14
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3. retro_ptro_2747 69.70 91.55
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Download FASTA sequences of all ENSPTRG00000002239 retrocopies