Parental gene:

IDI1, ENSCJAG00000008483

Aliases:None
Description:isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:5387]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:191280..198793(-)


>ENSCJAG00000008483
ATGTGGCGCGGACTGGCGCTTGGGAGGGCGATTGGCTGCGTGGCCCGGGGGTGGGGCCAGTGGGCGGTGCGCGCCACGGA
CAGCGCTCAAAGTCTGCGCGCTCGGGGGCCGGTGGTTGTCCGGGTCCGGAGGACGCTCAGTGTTCTAGGACAGATCAGAC
ATTTTGTAATGATGCCTGAAATAAACACTGACCACCTCGATGAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTT
ATTGATGAAAATGACAATAAAATTGGGGCTGAGACCAAGAAGAATTGTCACCTGAATGAGAACATTGACAAAGGATTATT
GCATCGAGCTTTTAGTGTCTTCTTATTCAACACTGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCT
TCCCAGGTTGTTTTACTAATACTTGTTGTAGTCATCCATTAAGTAATCCAGGCGAGCTTGAGGAAAATGACGCCCTTGGA
GTGAAGCGAGCAGCGCAGAGGCGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAACAGGTTCCTCCAGAAGAAATTAATTA
TTTAACACGAATTTACTACAAAGCTCAGTCGGATGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTTGTGAAAA
AGAATGTAACTTTGAATCCTGATCCCAATGAGATTAAAAGCTATTGTTATGTGTCAAAGGAAGAACTAAAAGAACTTCTG
AAAAAAGCAGCCAGTGGTGAAATTAAGATAACGCCATGGTTTCAAATTATTGCAGAGACTTTTCTCTTTAAATGGTGGGA
TAACTTAAATCATTTGAATCAGTTTGTTGACCATGAGAAAATACACAGAATGTGA

Library Parental gene expression (RPM)
SRP051959_colon 10 .67 RPM
SRP051959_heart 2 .16 RPM
SRP051959_kidney 4 .50 RPM
SRP051959_liver 53 .98 RPM
SRP051959_lung 2 .60 RPM
SRP051959_lymph_node 3 .06 RPM
SRP051959_skeletal_muscle 2 .56 RPM
SRP051959_spleen 2 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Erinaceus europaeus ENSEEUG00000012555 ortholog_one2one 3 retrogenes
retro_eeur_188, retro_eeur_198, retro_eeur_61,
Homo sapiens ENSG00000067064 ortholog_one2one 3 retrogenes
retro_hsap_2161, retro_hsap_2444, retro_hsap_4053,
Gorilla gorilla ENSGGOG00000000934 ortholog_one2one 3 retrogenes
retro_ggor_1521, retro_ggor_1717, retro_ggor_2722,
Macaca mulatta ENSMMUG00000017115 ortholog_one2one 3 retrogenes
retro_mmul_2340, retro_mmul_632, retro_mmul_899,
Monodelphis domestica ENSMODG00000005998 ortholog_one2one 5 retrogenes
retro_mdom_1107, retro_mdom_1692, retro_mdom_1697, retro_mdom_1724, retro_mdom_547,
Mus musculus ENSMUSG00000058258 ortholog_one2one 4 retrogenes
retro_mmus_2032, retro_mmus_2660, retro_mmus_417, retro_mmus_552,
Nomascus leucogenys ENSNLEG00000013594 ortholog_one2one 3 retrogenes
retro_nleu_1810, retro_nleu_2777, retro_nleu_2804,
Oryctolagus cuniculus ENSOCUG00000007493 ortholog_one2many 1 retrogene
retro_ocun_267,
Ochotona princeps ENSOPRG00000008692 ortholog_one2one 2 retrogenes
retro_opri_694, retro_opri_755,
Pongo abelii ENSPPYG00000002039 ortholog_one2one 2 retrogenes
retro_pabe_1783, retro_pabe_3327,
Pan troglodytes ENSPTRG00000002239 ortholog_one2one 3 retrogenes
retro_ptro_1412, retro_ptro_1647, retro_ptro_2747,
Ictidomys tridecemlineatus ENSSTOG00000023260 ortholog_one2many 1 retrogene
retro_itri_118,
Tursiops truncatus ENSTTRG00000011174 ortholog_one2one 1 retrogene
retro_ttru_255,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2083 90.32 65.14
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2. retro_cjac_2591 67.35 67.96
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3. retro_cjac_2820 85.23 82.39
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Download FASTA sequences of all ENSCJAG00000008483 retrocopies