Parental gene:

IDI1, ENSMMUG00000017115

Aliases:None
Description:isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:5387]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:9:1220054..1227162(-)


>ENSMMUG00000017115
ATGTGGTGCGGACTGGCGCTGGCGCGGGCGATTGGCTGCGCGGCCCGGTGGGCGGTGCGCGCTGCGGACAGCGCTCAAAG
TGGGCGCGCTCAGGGACCGGCCGGTGTCTGTGGCCGGAGGCCGATCAGTGTTCTAGGACAGATCAGACATTTTGTAATGA
TGCCTGAAATAAACACTGACCACCTCGACAAGCAACAGGTTCAACTCCTGGCAGAGATGTGTATCCTTATTGACGAAAAT
GACAATAAAATTGGGGCTGAGACCAAGAAGAATTGTCACCTGAATGAGAACATTGAGAAAGGATTATTGCATCGAGCTTT
TAGTGTCTTTTTATTCAACACTGAAAATAAGCTTCTGCTACAGCAAAGATCAGATGCTAAGATTACCTTTCCAGGTTGTT
TTACTAATACTTGTTGTAGTCATCCATTAAGTAATCCAGGCGAGCTTGAGGAAAATGACGCCCTTGGAGTGAGGCGAGCA
GCACAGAGGCGGCTGAAAGCTGAGCTAGGAATTCCCTTGGAAGAGGTTCCTCCAGAAGAAATTAATTATTTGACACGAAT
TCACTACAAAGCTCAGTCGGACGGTATCTGGGGTGAACATGAAATTGATTACATTTTGTTTGTGAGGAAGAATGTCACTC
TGAATCCAGATCCCAATGAGATTAAAAGCTTTTGTTATGTGTCCAAGGAAGAACTAAAAGAACTTCTGAAAAAAGCAGCC
AGTGGTGAAATTAAGATAACGCCATGGTTTCAAATTATTGCAGAGACTTTTCTCTTTAAATGGTGGGATAACTTAAATCA
TTTGAATCAGTTTGTTGATCATGAGAAAATACACAGAATGTGA

Library Parental gene expression (RPM)
SRP007412_brain 16 .81 RPM
SRP007412_brain_prefrontal_cortex 11 .66 RPM
SRP007412_cerebellum 11 .88 RPM
SRP007412_heart 4 .77 RPM
SRP007412_kidney 17 .37 RPM
SRP007412_liver 30 .64 RPM
SRP007412_testis 7 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008483 ortholog_one2one 3 retrogenes
retro_cjac_2083, retro_cjac_2591, retro_cjac_2820,
Erinaceus europaeus ENSEEUG00000012555 ortholog_one2one 3 retrogenes
retro_eeur_188, retro_eeur_198, retro_eeur_61,
Homo sapiens ENSG00000067064 ortholog_one2one 3 retrogenes
retro_hsap_2161, retro_hsap_2444, retro_hsap_4053,
Gorilla gorilla ENSGGOG00000000934 ortholog_one2one 3 retrogenes
retro_ggor_1521, retro_ggor_1717, retro_ggor_2722,
Monodelphis domestica ENSMODG00000005998 ortholog_one2one 5 retrogenes
retro_mdom_1107, retro_mdom_1692, retro_mdom_1697, retro_mdom_1724, retro_mdom_547,
Mus musculus ENSMUSG00000058258 ortholog_one2one 4 retrogenes
retro_mmus_2032, retro_mmus_2660, retro_mmus_417, retro_mmus_552,
Nomascus leucogenys ENSNLEG00000013594 ortholog_one2one 3 retrogenes
retro_nleu_1810, retro_nleu_2777, retro_nleu_2804,
Oryctolagus cuniculus ENSOCUG00000007493 ortholog_one2many 1 retrogene
retro_ocun_267,
Ochotona princeps ENSOPRG00000008692 ortholog_one2one 2 retrogenes
retro_opri_694, retro_opri_755,
Pongo abelii ENSPPYG00000002039 ortholog_one2one 2 retrogenes
retro_pabe_1783, retro_pabe_3327,
Pan troglodytes ENSPTRG00000002239 ortholog_one2one 3 retrogenes
retro_ptro_1412, retro_ptro_1647, retro_ptro_2747,
Ictidomys tridecemlineatus ENSSTOG00000023260 ortholog_one2many 1 retrogene
retro_itri_118,
Tursiops truncatus ENSTTRG00000011174 ortholog_one2one 1 retrogene
retro_ttru_255,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_632 72.12 73.57
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2. retro_mmul_899 89.41 83.93
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3. retro_mmul_2340 73.68 60.71
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Download FASTA sequences of all ENSMMUG00000017115 retrocopies