Parental gene:

CHM, ENSPPYG00000020520

Aliases:None
Description:rab proteins geranylgeranyltransferase component A 1 [Source:RefSeq peptide;Acc:NP_001124994]
Organism:Orangutan (Pongo abelii)
Coordinates:X:84257924..84444903(-)


>ENSPPYG00000020520
ATGTTGATCGTAATAGGGACGGGTTTGCCTGAATCCATCACTGCAGCTGCATGTTCAAGAAGTGGCCGGAGAGTTCTGCA
TGTTGATTCAAGAAGCTACTATGGAGGAAACTGGGCCAGTTTTAGCTTTTCAGGACTATTGTCCTGGCTAAAGGAATACC
AGGAAAACAGTGACATTGTAAGTGACAGTCCAGTGTGGCAAGACCAGATCCTTGAAAATGAAGAAGCCATTGCTCTTAGC
AGGAAGGACAAAACTATTCAACATGTGGAAGTATTTTGTTATGCCAGTCAGGATTTGAATGAAGATGTCGAAGAAGCTGG
TGCACTGCAGAAAAATCATGCTCTTGTAACATCTGCAAACTCCACAGAAGCTTCAGATTCTGCCTTCCTGCCTACGGAGG
ATGAGTCATTAAGCACTATGAGCTGTGAAATGCTCACAGAACAAACTCCAAGCAGTGATCCAGAGAATGCGCTAGAAGTA
AATGGTGCTGAAGTGACAGGGGAAAAAGAAAACCATTGTGATGATAAAACTTGCGTGCCATCAACTTCAGCAGAAGACAT
GAGTGAAAATGTGCCTATAGCAGAAGATACCACAGAGCAACCAAAGAAAAACATAATTACTTACTCACAAATTATTAAAG
AAGGCAGGAGATTTAATATTGATTTAGTATCAAAGCTGCTGTATTCTCGAGGATTACTAATTGATCTTCTAATCAAATCT
AATGTTAGTCGATATGCAGAGTTTAAAAATATTACCAGGATTCTTGCATTTCGAGAAGGACAAGTGGAACAGGTTCCGTG
TTCCAGAGCAGATGTCTTTAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGCTAATGAAATTTCTTACATTTTGTA
TGGAATATGAGAAATATCCTGATGAATATAAAGGATATGAAGAGATTACATTTTATGAATATTTAAAGACTCAAAAATTA
ACCCCCAACCTCCAATATATTGTCCTGCATTCAATTGCAATGACATCAGAGACAACCAGCAGTACCATGGATGGTCTCAA
AGCTACCAAAAACTTTCTTCACTGTCTTGGGCGGTATGGCAACACTCCATTTTTGTTTCCTTTATATGGCCAAGGAGAAC
TCCCCCAGTGTTTCTGCAGGATGTGTGCTGTGTTTGGTGGAATTTATTGTCTTCGCCATTCAGTACAGTGCCTTGTAGTG
GACAAAGAATCCAGAAAATGTAAAGCAATTATAGATCAGTTTGGTCAGAGAATAATCTCTGAGCATTTCCTCGTGGAGGA
CAGTTACTTTTCTGAGAACATGTGCTCACGTGTGCAATACAGGCAGATCTCCAGGGCAGTGCTGATTACAGATAGATCTG
TCCTAAAAACAGATTCAGATCAACAGATTTCCATTTTGACAGTGCCAGCAGAGGAACCAGGAACTTTTGCTGTTCGGGTC
ATTGAGTTATGTTCTTCAACGATGACATGCATGAAAGGCACCTATTTGGTTCATTTGACTTGCACATCTTCTAAAACAGC
AAGAGAAGATTTAGAACCAGTTGTGCAGAAATTGTTTATTCCATATACTGAAATGGAGATAGAAAATGAACAAGTAGAAA
AGCCAAGAATTCTGTGGGCTCTTTACTTCAATATGAGAGATTCGTCAGACATCAGCAGGAGCTGTTATAGTGATTTACCA
TCCAACGTTTATGTCTGCTCTGGCCCAGATTGTGGTTTAGGAAATGATAACGCAGTCAAACAGGCTGAAACACTTTTCCA
GGAAATCTGCCCCAATGAAGATTTCTGTCCCCCTCCACCAAATCCTGAAGACATTGTCCTTGATGGAGACGGTTTACAGC
CAGAGACTTCAGAATCCAGTGCCATACCAGAGGCTAACTCAGAGACTTTCGAGGAAAGCACAAACCTTGGAAACCTAGAG
GAGTCCTCTGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .23 RPM
SRP007412_cerebellum 22 .50 RPM
SRP007412_heart 5 .75 RPM
SRP007412_kidney 8 .92 RPM
SRP007412_liver 4 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010190 ortholog_one2one 1 retrogene
retro_amel_733,
Bos taurus ENSBTAG00000009598 ortholog_one2one 1 retrogene
retro_btau_227,
Canis familiaris ENSCAFG00000017406 ortholog_one2one 1 retrogene
retro_cfam_1873,
Equus caballus ENSECAG00000019201 ortholog_one2one 1 retrogene
retro_ecab_36,
Felis catus ENSFCAG00000030652 ortholog_one2one 1 retrogene
retro_fcat_1744,
Homo sapiens ENSG00000188419 ortholog_one2one 1 retrogene
retro_hsap_56,
Gorilla gorilla ENSGGOG00000022912 ortholog_one2one 1 retrogene
retro_ggor_488,
Loxodonta africana ENSLAFG00000000523 ortholog_one2one 1 retrogene
retro_lafr_441,
Myotis lucifugus ENSMLUG00000011286 ortholog_one2one 1 retrogene
retro_mluc_138,
Macaca mulatta ENSMMUG00000016776 ortholog_one2one 1 retrogene
retro_mmul_460,
Monodelphis domestica ENSMODG00000014364 ortholog_one2many 1 retrogene
retro_mdom_1776,
Mustela putorius furo ENSMPUG00000001194 ortholog_one2one 1 retrogene
retro_mputfur_831,
Mus musculus ENSMUSG00000025531 ortholog_one2one 1 retrogene
retro_mmus_284,
Nomascus leucogenys ENSNLEG00000002762 ortholog_one2one 1 retrogene
retro_nleu_120,
Oryctolagus cuniculus ENSOCUG00000012819 ortholog_one2one 1 retrogene
retro_ocun_893,
Pan troglodytes ENSPTRG00000022071 ortholog_one2one 1 retrogene
retro_ptro_400,
Rattus norvegicus ENSRNOG00000000161 ortholog_one2one 1 retrogene
retro_rnor_981,
Sarcophilus harrisii ENSSHAG00000017568 ortholog_one2many 1 retrogene
retro_shar_127,
Ictidomys tridecemlineatus ENSSTOG00000022111 ortholog_one2one 1 retrogene
retro_itri_870,
Vicugna pacos ENSVPAG00000001963 ortholog_one2one 1 retrogene
retro_vpac_231,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_215 71.38 99.38
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Download FASTA sequences of all ENSPPYG00000020520 retrocopies