RetrogeneDB - Parental gene ENSPPYG00000019730 details

                            
>ENSPPYG00000019730
ATGCCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGT

GGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCT

TTGTGAAATGGCCCCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTATAAGCGGCTGAAAGTGCCTCCTGCGATT

AACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAA

GCAAGAGAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAAGCTGCTGGCAAAGGGGACGTCCCCACGAAGAGACCAC

CTGTCCTTCGAGCAGGAGTTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC

GTGGATCCCATCGAGCTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGGAA

GGCAAGACTGGGACGTCTAGTCCACAGGAAGACTTGTACCACTGTCGCCTTCACACAGGTGAACTCTGAAGACAAAGGCG

CTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACGACAGATATGATGAGATCCGCCGTCACTGGGGCGGCAAC

ATCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTA

A

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	169 .30 RPM
SRP007412_cerebellum	97 .28 RPM
SRP007412_heart	150 .31 RPM
SRP007412_kidney	335 .58 RPM
SRP007412_liver	292 .34 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011708	possible_ortholog	29 retrogenes	retro_amel_1000, retro_amel_1058, retro_amel_1149, retro_amel_1159, retro_amel_1207, retro_amel_1220, retro_amel_1269, retro_amel_1314, retro_amel_1417, retro_amel_142, retro_amel_1429, retro_amel_1471, retro_amel_1499, retro_amel_1506, retro_amel_1641, retro_amel_1644, retro_amel_169, retro_amel_170, retro_amel_1812, retro_amel_1873, retro_amel_357, retro_amel_463, retro_amel_525, retro_amel_529, retro_amel_544, retro_amel_671, retro_amel_726, retro_amel_758, retro_amel_801,
Canis familiaris	ENSCAFG00000017680	possible_ortholog	36 retrogenes	retro_cfam_1121, retro_cfam_1123, retro_cfam_1165, retro_cfam_1187, retro_cfam_1242, retro_cfam_1365, retro_cfam_1429, retro_cfam_1471, retro_cfam_1497, retro_cfam_1532, retro_cfam_1553, retro_cfam_1563, retro_cfam_1683, retro_cfam_1711, retro_cfam_1721, retro_cfam_1750, retro_cfam_1865, retro_cfam_1898, retro_cfam_2032, retro_cfam_2103, retro_cfam_2111, retro_cfam_2120, retro_cfam_2144, retro_cfam_311, retro_cfam_340, retro_cfam_380, retro_cfam_423, retro_cfam_476, retro_cfam_518, retro_cfam_605, retro_cfam_694, retro_cfam_723, retro_cfam_827, retro_cfam_853, retro_cfam_927, retro_cfam_935,
Callithrix jacchus	ENSCJAG00000014827	possible_ortholog	3 retrogenes	retro_cjac_199, retro_cjac_343, retro_cjac_49,
Cavia porcellus	ENSCPOG00000001324	possible_ortholog	4 retrogenes	retro_cpor_1296, retro_cpor_423, retro_cpor_828, retro_cpor_850,
Dasypus novemcinctus	ENSDNOG00000024424	possible_ortholog	8 retrogenes	retro_dnov_1245, retro_dnov_1509, retro_dnov_169, retro_dnov_1861, retro_dnov_2538, retro_dnov_2591, retro_dnov_302, retro_dnov_825,
Dipodomys ordii	ENSDORG00000006471	ortholog_one2many	3 retrogenes	retro_dord_198, retro_dord_218, retro_dord_516,
Equus caballus	ENSECAG00000008548	possible_ortholog	2 retrogenes	retro_ecab_4, retro_ecab_402,
Erinaceus europaeus	ENSEEUG00000000203	possible_ortholog	2 retrogenes	retro_eeur_114, retro_eeur_490,
Felis catus	ENSFCAG00000005825	possible_ortholog	20 retrogenes	retro_fcat_1123, retro_fcat_1137, retro_fcat_1170, retro_fcat_1277, retro_fcat_1315, retro_fcat_1318, retro_fcat_1344, retro_fcat_1528, retro_fcat_1583, retro_fcat_1771, retro_fcat_1980, retro_fcat_214, retro_fcat_252, retro_fcat_385, retro_fcat_389, retro_fcat_468, retro_fcat_542, retro_fcat_628, retro_fcat_694, retro_fcat_943,
Gorilla gorilla	ENSGGOG00000014442	ortholog_one2one	48 retrogenes	retro_ggor_1034, retro_ggor_1042, retro_ggor_1087, retro_ggor_1107, retro_ggor_1190, retro_ggor_1249, retro_ggor_1408, retro_ggor_1409, retro_ggor_1460, retro_ggor_1541, retro_ggor_1591, retro_ggor_172, retro_ggor_1724, retro_ggor_1881, retro_ggor_194, retro_ggor_2004, retro_ggor_2033, retro_ggor_2087, retro_ggor_2117, retro_ggor_2147, retro_ggor_2313, retro_ggor_2410, retro_ggor_2430, retro_ggor_2480, retro_ggor_2522, retro_ggor_2578, retro_ggor_2611, retro_ggor_2617, retro_ggor_2618, retro_ggor_2779, retro_ggor_2781, retro_ggor_2871, retro_ggor_2872, retro_ggor_288, retro_ggor_2960, retro_ggor_310, retro_ggor_333, retro_ggor_386, retro_ggor_539, retro_ggor_626, retro_ggor_636, retro_ggor_640, retro_ggor_658, retro_ggor_663, retro_ggor_815, retro_ggor_865, retro_ggor_904, retro_ggor_963,
Loxodonta africana	ENSLAFG00000006436	possible_ortholog	2 retrogenes	retro_lafr_1059, retro_lafr_1132,
Macropus eugenii	ENSMEUG00000014550	ortholog_one2many	16 retrogenes	retro_meug_1268, retro_meug_133, retro_meug_1362, retro_meug_1523, retro_meug_1581, retro_meug_1872, retro_meug_2011, retro_meug_2080, retro_meug_2101, retro_meug_2123, retro_meug_401, retro_meug_632, retro_meug_654, retro_meug_687, retro_meug_699, retro_meug_919,
Myotis lucifugus	ENSMLUG00000004666	possible_ortholog	10 retrogenes	retro_mluc_1033, retro_mluc_1087, retro_mluc_1359, retro_mluc_1365, retro_mluc_1745, retro_mluc_1877, retro_mluc_2074, retro_mluc_541, retro_mluc_558, retro_mluc_670,
Macaca mulatta	ENSMMUG00000022341	possible_ortholog	9 retrogenes	retro_mmul_113, retro_mmul_130, retro_mmul_204, retro_mmul_230, retro_mmul_252, retro_mmul_259, retro_mmul_309, retro_mmul_33, retro_mmul_4,
Monodelphis domestica	ENSMODG00000012754	ortholog_one2many	3 retrogenes	retro_mdom_1347, retro_mdom_418, retro_mdom_586,
Mustela putorius furo	ENSMPUG00000012398	possible_ortholog	13 retrogenes	retro_mputfur_1081, retro_mputfur_1210, retro_mputfur_1281, retro_mputfur_1344, retro_mputfur_1380, retro_mputfur_1611, retro_mputfur_1612, retro_mputfur_325, retro_mputfur_459, retro_mputfur_656, retro_mputfur_698, retro_mputfur_792, retro_mputfur_900,
Mus musculus	ENSMUSG00000062647	ortholog_one2many	10 retrogenes	retro_mmus_120, retro_mmus_141, retro_mmus_165, retro_mmus_166, retro_mmus_214, retro_mmus_226, retro_mmus_267, retro_mmus_34, retro_mmus_43, retro_mmus_93,
Nomascus leucogenys	ENSNLEG00000013068	possible_ortholog	22 retrogenes	retro_nleu_1051, retro_nleu_1056, retro_nleu_137, retro_nleu_1404, retro_nleu_1418, retro_nleu_1682, retro_nleu_1920, retro_nleu_2130, retro_nleu_2254, retro_nleu_2341, retro_nleu_2397, retro_nleu_2423, retro_nleu_2641, retro_nleu_267, retro_nleu_2822, retro_nleu_2853, retro_nleu_399, retro_nleu_432, retro_nleu_562, retro_nleu_780, retro_nleu_796, retro_nleu_82,
Otolemur garnettii	ENSOGAG00000014027	possible_ortholog	16 retrogenes	retro_ogar_1014, retro_ogar_1172, retro_ogar_1638, retro_ogar_1735, retro_ogar_1815, retro_ogar_2774, retro_ogar_3012, retro_ogar_3097, retro_ogar_319, retro_ogar_404, retro_ogar_57, retro_ogar_685, retro_ogar_758, retro_ogar_850, retro_ogar_926, retro_ogar_994,
Ochotona princeps	ENSOPRG00000005726	possible_ortholog	4 retrogenes	retro_opri_451, retro_opri_629, retro_opri_65, retro_opri_922,
Rattus norvegicus	ENSRNOG00000049097	ortholog_one2many	10 retrogenes	retro_rnor_123, retro_rnor_15, retro_rnor_238, retro_rnor_303, retro_rnor_323, retro_rnor_346, retro_rnor_368, retro_rnor_398, retro_rnor_403, retro_rnor_86,
Sarcophilus harrisii	ENSSHAG00000004337	ortholog_one2many	4 retrogenes	retro_shar_157, retro_shar_338, retro_shar_401, retro_shar_494,
Ictidomys tridecemlineatus	ENSSTOG00000003671	ortholog_one2many	3 retrogenes	retro_itri_1034, retro_itri_53, retro_itri_920,
Tupaia belangeri	ENSTBEG00000008595	ortholog_one2one	26 retrogenes	retro_tbel_1102, retro_tbel_112, retro_tbel_1314, retro_tbel_1420, retro_tbel_1484, retro_tbel_174, retro_tbel_1770, retro_tbel_1892, retro_tbel_1916, retro_tbel_2015, retro_tbel_2063, retro_tbel_2630, retro_tbel_2748, retro_tbel_2896, retro_tbel_3005, retro_tbel_3017, retro_tbel_3445, retro_tbel_4295, retro_tbel_4298, retro_tbel_4737, retro_tbel_542, retro_tbel_686, retro_tbel_861, retro_tbel_949, retro_tbel_950, retro_tbel_960,
Tarsius syrichta	ENSTSYG00000005467	possible_ortholog	20 retrogenes	retro_tsyr_1009, retro_tsyr_1012, retro_tsyr_1166, retro_tsyr_1168, retro_tsyr_1280, retro_tsyr_1346, retro_tsyr_158, retro_tsyr_1798, retro_tsyr_182, retro_tsyr_1824, retro_tsyr_1939, retro_tsyr_2039, retro_tsyr_214, retro_tsyr_251, retro_tsyr_484, retro_tsyr_63, retro_tsyr_696, retro_tsyr_880, retro_tsyr_907, retro_tsyr_911,
Tursiops truncatus	ENSTTRG00000007645	ortholog_one2many	3 retrogenes	retro_ttru_1334, retro_ttru_1681, retro_ttru_1824,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_267	70.41	72.93	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_271	92.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_293	72.16	65.41	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_330	82.49	79.70	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_379	91.35	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_519	84.27	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_540	87.01	66.17	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_549	66.81	88.35	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pabe_581	91.16	80.45	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pabe_645	91.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_pabe_664	85.19	89.47	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_pabe_682	74.05	58.65	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_pabe_715	70.06	65.41	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_pabe_725	72.86	76.69	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_pabe_755	65.54	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_pabe_864	81.36	65.04	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_pabe_914	80.00	50.38	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_pabe_963	90.26	100.00	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_pabe_1022	59.87	55.64	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_pabe_1104	80.18	81.58	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_pabe_1112	79.01	60.90	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_pabe_1160	84.71	58.65	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_pabe_1189	83.90	100.00	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_pabe_1305	96.24	100.00	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_pabe_1368	89.47	100.00	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_pabe_1652	65.15	97.74	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_pabe_1662	84.91	79.32	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_pabe_1871	91.79	100.00	Please wait, loading	Please wait, loading	Please wait, loading
29.	retro_pabe_2059	70.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
30.	retro_pabe_2264	51.66	55.64	Please wait, loading	Please wait, loading	Please wait, loading
31.	retro_pabe_2286	93.63	100.00	Please wait, loading	Please wait, loading	Please wait, loading
32.	retro_pabe_2305	67.74	57.89	Please wait, loading	Please wait, loading	Please wait, loading
33.	retro_pabe_2394	74.32	54.89	Please wait, loading	Please wait, loading	Please wait, loading
34.	retro_pabe_2501	57.38	87.97	Please wait, loading	Please wait, loading	Please wait, loading
35.	retro_pabe_2522	84.07	100.00	Please wait, loading	Please wait, loading	Please wait, loading
36.	retro_pabe_2534	88.48	71.80	Please wait, loading	Please wait, loading	Please wait, loading
37.	retro_pabe_2553	96.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading
38.	retro_pabe_2588	90.95	74.81	Please wait, loading	Please wait, loading	Please wait, loading
39.	retro_pabe_2654	80.37	60.53	Please wait, loading	Please wait, loading	Please wait, loading
40.	retro_pabe_2896	65.58	56.77	Please wait, loading	Please wait, loading	Please wait, loading
41.	retro_pabe_2960	85.02	100.00	Please wait, loading	Please wait, loading	Please wait, loading
42.	retro_pabe_3009	77.04	95.11	Please wait, loading	Please wait, loading	Please wait, loading
43.	retro_pabe_3033	84.70	100.00	Please wait, loading	Please wait, loading	Please wait, loading
44.	retro_pabe_3079	85.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
45.	retro_pabe_3118	74.84	57.89	Please wait, loading	Please wait, loading	Please wait, loading
46.	retro_pabe_3171	79.70	99.25	Please wait, loading	Please wait, loading	Please wait, loading
47.	retro_pabe_3231	82.51	68.42	Please wait, loading	Please wait, loading	Please wait, loading
48.	retro_pabe_3444	89.16	93.61	Please wait, loading	Please wait, loading	Please wait, loading
49.	retro_pabe_3467	80.33	89.10	Please wait, loading	Please wait, loading	Please wait, loading
50.	retro_pabe_3469	83.52	100.00	Please wait, loading	Please wait, loading	Please wait, loading
51.	retro_pabe_3500	77.14	52.26	Please wait, loading	Please wait, loading	Please wait, loading
52.	retro_pabe_3700	67.89	80.83	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000019730 retrocopies

Parental gene:	RPL7A, ENSPPYG00000019730
Aliases:	None
Description:	ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	9:130286898..130290412(+)

Parental gene:

RPL7A, ENSPPYG00000019730