Parental gene:

NPM1, ENSPPYG00000016037

Aliases:None
Description:nucleophosmin [Source:RefSeq peptide;Acc:NP_001125077]
Organism:Orangutan (Pongo abelii)
Coordinates:5:173991178..174009898(+)


>ENSPPYG00000016037
TGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACGGT
CAGTTTAGGGGCTGGTGCAAAGGATGAATTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAG
TAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTA
AGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGA
TGAAGAGGAGGAGGATGTGAAACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGA
AAAAAGTAAAACTTGCAGCTGATGAAGATGATGACGATGATGATGAAGATGATGATGATGAAGATGATGATGATGATGAT
TTTGATGATGAGGAAGCTGAAGAAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTC
AAATCAGAATGGAAAAGACTCAAAACCATCATCAACACCAAGATCAAAAGGACAAGAATCCTTCAAAAAACAGGAAAAAA
CTCCTAAAACACCAAAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCT
CTTCCCAAAGTGGAAGCCAAGTTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAGGCTATTCAAGATCT
CTGGCAGTGGAGGAAGTCTCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 35 .28 RPM
SRP007412_cerebellum 26 .27 RPM
SRP007412_heart 46 .66 RPM
SRP007412_kidney 60 .76 RPM
SRP007412_liver 48 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003910 possible_ortholog 1 retrogene
retro_amel_983,
Bos taurus ENSBTAG00000015316 ortholog_many2many 2 retrogenes
retro_btau_538, retro_btau_56,
Canis familiaris ENSCAFG00000016912 ortholog_many2many 3 retrogenes
retro_cfam_22, retro_cfam_286, retro_cfam_900,
Callithrix jacchus ENSCJAG00000019334 possible_ortholog 13 retrogenes
retro_cjac_1559, retro_cjac_1682, retro_cjac_1696, retro_cjac_1733, retro_cjac_2075, retro_cjac_2351, retro_cjac_2368, retro_cjac_2533, retro_cjac_2605, retro_cjac_3270, retro_cjac_3416, retro_cjac_4117, retro_cjac_838,
Equus caballus ENSECAG00000021950 possible_ortholog 4 retrogenes
retro_ecab_1016, retro_ecab_1100, retro_ecab_393, retro_ecab_544,
Felis catus ENSFCAG00000030268 ortholog_many2many 3 retrogenes
retro_fcat_156, retro_fcat_376, retro_fcat_720,
Homo sapiens ENSG00000181163 ortholog_one2one 30 retrogenes
retro_hsap_1275, retro_hsap_129, retro_hsap_1526, retro_hsap_1580, retro_hsap_1593, retro_hsap_1621, retro_hsap_2226, retro_hsap_2375, retro_hsap_2478, retro_hsap_2856, retro_hsap_2862, retro_hsap_3355, retro_hsap_3460, retro_hsap_3609, retro_hsap_3636, retro_hsap_3718, retro_hsap_3776, retro_hsap_3808, retro_hsap_3817, retro_hsap_3822, retro_hsap_3962, retro_hsap_4666, retro_hsap_4753, retro_hsap_4785, retro_hsap_614, retro_hsap_638, retro_hsap_690, retro_hsap_717, retro_hsap_785, retro_hsap_961,
Gorilla gorilla ENSGGOG00000007220 possible_ortholog 12 retrogenes
retro_ggor_1543, retro_ggor_1660, retro_ggor_1976, retro_ggor_2453, retro_ggor_2454, retro_ggor_2539, retro_ggor_2559, retro_ggor_2571, retro_ggor_2681, retro_ggor_2959, retro_ggor_560, retro_ggor_591,
Macaca mulatta ENSMMUG00000015781 possible_ortholog 1 retrogene
retro_mmul_203,
Mus musculus ENSMUSG00000057113 possible_ortholog 5 retrogenes
retro_mmus_1301, retro_mmus_1798, retro_mmus_3131, retro_mmus_539, retro_mmus_550,
Otolemur garnettii ENSOGAG00000013616 possible_ortholog 14 retrogenes
retro_ogar_1554, retro_ogar_1623, retro_ogar_1671, retro_ogar_1776, retro_ogar_2015, retro_ogar_2168, retro_ogar_2207, retro_ogar_2461, retro_ogar_2605, retro_ogar_2832, retro_ogar_3037, retro_ogar_536, retro_ogar_595, retro_ogar_614,
Pongo abelii ENSPPYG00000002589 within_species_paralog 1 retrogene
retro_pabe_706,
Pteropus vampyrus ENSPVAG00000002211 ortholog_one2many 1 retrogene
retro_pvam_851,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_486 93.53 50.73
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_pabe_532 90.91 51.82
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_pabe_2405 99.28 50.73
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_pabe_3072 65.24 75.55
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_pabe_3261 84.62 51.09
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_pabe_3627 89.29 50.73
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_pabe_3699 86.33 50.73
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000016037 retrocopies