Parental gene:

BRIX1, ENSPPYG00000015390

Aliases:BRIX1, BRIX, BXDC2
Description:ribosome biogenesis protein BRX1 homolog [Source:RefSeq peptide;Acc:NP_001125690]
Organism:Orangutan (Pongo abelii)
Coordinates:5:35790119..35803645(+)


>ENSPPYG00000015390
ATGGCGGCAACCAAGAGGAAACGGCGTGGAGGTTTTGCAGTTCAGGCGAAGAAGCCAAAAAGAAACGAAAAAGATGCGGA
GCCGCCAGCTAAGCGGCACGCCACAGCAGAGGAGGTGGAGGAAGAAGAGAGGGACCGGATCCCAGGCCCCGTTTGCAAGG
GAAAGTGGAAAAATAAGGAACGGATTCTCATCTTTTCTTCCAGAGGAATAAATTTCAGAACAAGACATTTAATGCAGGAC
TTGAGAATGTTGATGCCTCATTCTAAAGCAGCATCTAGTTTACCTTGGGTAGAATACCTAAGAGGAACTTTAAAGGTTTG
TGAAATGAAGAACTGTAATAAATGCATCTATTTTGAAGCTAAGAAAAAACAGGATCTCTATATGTGGCTTTCAAATTCAC
CTCATGGACCATCTGCTAAATTCCTTGTTCAAAATATTCATACTCTTGCTGAACTAAAGATGACTGGAAACTGTTTGAAA
GGTTCTCGGCCCCTTTTGTCTTTTGACCCTGCTTTTGATGAATTACCACATTATGCTTTGTTAAAAGAACTCTTAATTCA
GATCTTTAGTACACCACGGTATCATCCCAAAAGCCAACCATTCGTGGACCATGTGTTTACTTTCACCATTTTGGATAATA
GGATATGGTTTCGGAACTTTCAGATCATAGAAGAAGATGCTGCTCTTGTAGAAATAGGACCTCGTTTTGTCTTAAATCTC
ATAAAGATTTTCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCCTCACTACCAGTCACCAAACATGCATCGGCG
TGTCATAAGATCCATCACAGCTGCAAAATACAGAGAGAAACAGCAAGTGAAAGATGTGCAAAAACTGAGAAAGAAAGAGC
CGAAGACTCTTCTTCCACATGATCCCACTGCAGATGTTTTTGTAACGCCAGCTGAGGAGAAACCAATAGAAATACAGTGG
GTGAAACCAGAGCCAAAAGTTGATTTGAAAGCAAGAAAGAAACGGATTTACAAAAGGCAAAGAAAAATGAAACAGAGGAT
GGACAGTGGGAAAACAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .91 RPM
SRP007412_cerebellum 15 .81 RPM
SRP007412_heart 5 .36 RPM
SRP007412_kidney 8 .42 RPM
SRP007412_liver 8 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001790 ortholog_one2many 2 retrogenes
retro_chof_1664, retro_chof_1776,
Callithrix jacchus ENSCJAG00000018506 ortholog_one2one 1 retrogene
retro_cjac_1389,
Homo sapiens ENSG00000113460 ortholog_one2one 1 retrogene
retro_hsap_3954,
Gorilla gorilla ENSGGOG00000004225 ortholog_one2one 1 retrogene
retro_ggor_2657,
Loxodonta africana ENSLAFG00000007249 ortholog_one2one 1 retrogene
retro_lafr_1116,
Myotis lucifugus ENSMLUG00000029255 ortholog_one2one 3 retrogenes
retro_mluc_1402, retro_mluc_707, retro_mluc_963,
Macaca mulatta ENSMMUG00000000442 ortholog_one2one 1 retrogene
retro_mmul_2289,
Monodelphis domestica ENSMODG00000020386 ortholog_one2one 1 retrogene
retro_mdom_1032,
Nomascus leucogenys ENSNLEG00000014452 ortholog_one2one 1 retrogene
retro_nleu_533,
Otolemur garnettii ENSOGAG00000014827 ortholog_one2one 2 retrogenes
retro_ogar_3116, retro_ogar_793,
Pan troglodytes ENSPTRG00000016784 ortholog_one2one 1 retrogene
retro_ptro_2684,
Rattus norvegicus ENSRNOG00000018021 ortholog_one2one 1 retrogene
retro_rnor_1140,
Tupaia belangeri ENSTBEG00000011652 ortholog_one2one 9 retrogenes
retro_tbel_1963, retro_tbel_1964, retro_tbel_2981, retro_tbel_3002, retro_tbel_3082, retro_tbel_4194, retro_tbel_4229, retro_tbel_4418, retro_tbel_954,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3258 74.34 85.27
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2. retro_pabe_3379 74.34 85.27
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Download FASTA sequences of all ENSPPYG00000015390 retrocopies