Parental gene:

PSMA3, ENSPPYG00000005855

Aliases:None
Description:proteasome (prosome, macropain) subunit, alpha type, 3 [Source:HGNC Symbol;Acc:9532]
Organism:Orangutan (Pongo abelii)
Coordinates:14:58866223..58896920(+)


>ENSPPYG00000005855
ATGAGCTCAATCGGCACCGGGTATGACCTGTCAGCCTCTACATTCTCTCCTGACGGAAGAGTTTTTCAAGTTGAATATGC
TATGAAGGCTGTGGAAAATAGTAGTACAGCTATTGGAATCAGATGCAAAGATGGTGTTGTCTTTGGGGTAGAAAAATTAG
TCCTTTCTAAACTTTATGAAGAAGGTTCCAACAAACGACTTTTTAATGTTGATCGGCATGTTGGAATGGCAGTAGCAGGT
TTGTTGGCAGATGCTCGTTCTTTAGCAGACATAGCAAGAGAAGAAGCTTCCAACTTTAGATCTAACTTTGGCTACAACAT
TCCACTAAAACATCTTGCAGACAGAGTGGCCATGTATGTGCATGCATATACACTCTACAGTGCTGTTAGACCTTTTGGCT
GCAGTTTCATGTTAGGGTCTTACAGTGTGAATGACGGTGCACAACTCTACATGATTGACCCATCAGGTGTTTCATATGGT
TATTGGGGCTGTGCCATTGGCAAAGCCAGGCAAGCTGCAAAGACGGAAATAGAGAAGCTTCAGATGAAAGAAATGACCTG
CCGTGATATCGTTAAAGAAGTTGCAAAAATAATTTACATAGTACATGATGAAGTTAAGGATAAAGCTTTTGAACTAGAAC
TCAGCTGGGTTGGTGAATTAACTAATGGAAGACATGAAATTGTTCCAAAAGATATAAGGGAAGAAGCAGAGAAATATGCT
AAGGAATCTCTGAAGGAAGAAGATGAATCAGATGATGATAATATGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 18 .19 RPM
SRP007412_cerebellum 30 .16 RPM
SRP007412_heart 20 .05 RPM
SRP007412_kidney 26 .02 RPM
SRP007412_liver 29 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015287 ortholog_one2one 1 retrogene
retro_cfam_1331,
Callithrix jacchus ENSCJAG00000018732 ortholog_one2many 1 retrogene
retro_cjac_3974,
Dasypus novemcinctus ENSDNOG00000004077 ortholog_one2one 27 retrogenes
retro_dnov_1089, retro_dnov_1115, retro_dnov_1156, retro_dnov_1240, retro_dnov_1252, retro_dnov_1285, retro_dnov_1347, retro_dnov_1473, retro_dnov_1542, retro_dnov_1604, retro_dnov_1650, retro_dnov_1662, retro_dnov_1783, retro_dnov_1785, retro_dnov_1791, retro_dnov_1880, retro_dnov_1896, retro_dnov_198, retro_dnov_2030, retro_dnov_2125, retro_dnov_2128, retro_dnov_2334, retro_dnov_2507, retro_dnov_2578, retro_dnov_447, retro_dnov_765, retro_dnov_992,
Dipodomys ordii ENSDORG00000002167 ortholog_one2one 1 retrogene
retro_dord_402,
Homo sapiens ENSG00000100567 ortholog_one2one 1 retrogene
retro_hsap_1348,
Gorilla gorilla ENSGGOG00000015814 ortholog_one2one 1 retrogene
retro_ggor_1049,
Macaca mulatta ENSMMUG00000003509 ortholog_one2one 2 retrogenes
retro_mmul_2187, retro_mmul_564,
Monodelphis domestica ENSMODG00000007839 ortholog_one2one 1 retrogene
retro_mdom_544,
Mustela putorius furo ENSMPUG00000006126 ortholog_one2one 2 retrogenes
retro_mputfur_1549, retro_mputfur_414,
Mus musculus ENSMUSG00000060073 ortholog_one2one 3 retrogenes
retro_mmus_1277, retro_mmus_1463, retro_mmus_2810,
Nomascus leucogenys ENSNLEG00000013092 ortholog_one2one 1 retrogene
retro_nleu_1831,
Oryctolagus cuniculus ENSOCUG00000010316 ortholog_one2one 1 retrogene
retro_ocun_667,
Otolemur garnettii ENSOGAG00000000382 ortholog_one2one 2 retrogenes
retro_ogar_1764, retro_ogar_2857,
Ochotona princeps ENSOPRG00000002835 ortholog_one2one 2 retrogenes
retro_opri_67, retro_opri_991,
Pan troglodytes ENSPTRG00000006390 ortholog_one2one 1 retrogene
retro_ptro_923,
Rattus norvegicus ENSRNOG00000007851 ortholog_one2many 1 retrogene
retro_rnor_183,
Sorex araneus ENSSARG00000002670 ortholog_one2one 2 retrogenes
retro_sara_437, retro_sara_573,
Ictidomys tridecemlineatus ENSSTOG00000013539 ortholog_one2one 1 retrogene
retro_itri_1317,
Tupaia belangeri ENSTBEG00000016910 ortholog_one2one 1 retrogene
retro_tbel_1947,
Tursiops truncatus ENSTTRG00000013526 ortholog_one2one 1 retrogene
retro_ttru_545,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_339 79.05 57.65
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2. retro_pabe_1120 77.01 72.94
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Download FASTA sequences of all ENSPPYG00000005855 retrocopies