Parental gene:

TOX4, ENSPPYG00000005598

Aliases:None
Description:TOX high mobility group box family member 4 [Source:RefSeq peptide;Acc:NP_001126876]
Organism:Orangutan (Pongo abelii)
Coordinates:14:20860121..20880971(+)


>ENSPPYG00000005598
ATGGAGTTTCCCGGAGGAAATGACAATTACCTGACGATCACAGGGCCTTCGCACCCCTTCCTGTCAGGGGCCGAGACATT
CCACACACCAAGCTTGGGTGATGAGGAATTTGAAATCCCACCTATCTCCTTGGATTCTGATCCCTCATTGGCTGTCTCAG
ATGTGGTTGGCCACTTTGATGACCTGGCAGACCCTTCCTCTTCACAGGATGGCAGTTTTTCAGCCCAGTATGGGGTCCAG
ACATTGGACATGCCTGTGGGCATGACCCATGGCTTGATGGAGCAGGGCGGGGGGCTCCTGAGTGGGGGCTTGACCATGGA
CTTGGACCACTCTATAGGAACTCAGTATAGTGCCAACCCACCTGTTACAATTGATGTACCAATGACAGACATGACATCTG
GCTTGATGGGGCATAGCCAGTTGACCACCATTGATCAGTCAGAACTGAGTTCCCAACTGGGTTTGAGCCTAGGGGGTGGC
ACCATCCTGCCACCTGCCCAGTCACCTGAAGATCGTCTTTCAACCACCCCTTCACCTACTAGTTCACTTCACGAGGATGG
TGTTGAGGATTTCCGGAGGCAACTTCCCAGCCAGAAGACAGTCGTGGTGGAAGCAGGGAAAAAGCAGAAGGCCCCAAAGA
AGAGAAAAAAGAAAGATCCTAATGAACCTCAGAAACCAGTTTCAGCATATGCTTTATTCTTTCGTGATACACAGGCTGCC
ATCAAGGGACAGAATCCTAATGCCACTTTTGGTGAGGTTTCAAAAATTGTGGCCTCCATGTGGGATAGTCTTGGAGAGGA
GCAAAAACAGGTATATAAGAGGAAAACTGAGGCTGCCAAGAAAGAGTATCTGAAGGCACTGGCTGCTTACAAAGACAACC
AGGAGTGTCAGGCCACTGTGGAAACAGTGGAATTGGATCCAGCACCACCATCACAAACTCCTTCTCCACCTCCTATGGCT
ACTGTTGACCCAGGCATCCAGCCAGCTTCAATAGTAGCTACCCCTGCCCTGTCCCCATCCATTGTTGTTAACTCCACCCT
TTCACCTTCCTATGTGAACCAGGCATCTTCTGGAGCTGGGGGTCGAGCCCAATATAGTTTGATTATTACCAAACAAATGT
TGCCGTCTTCCATTACTATGTCTCAAGGATGGGTTACTGTTATCCCAGCCACAGTGGTGACCTCCCGGGGGCAACTAGGC
CAAACCAGTACAGCTACTATCCAGCCCAGTCAGCAAGCCCAGATTGTCACTCGGTCAGTGTTGCAGGCAGCAGCTGCTGC
TGCTGCTGCTGCTTCTATGCAACTGCCTCCACCCCGACTACAGCCCCCTCCATTACAACAGATGCCACAGCCCCCGACTC
AGCAGCAAGTTACCATTCTCAGCCCTCCTCCACTCCAGGCCATGCAACAGCCTCGCACCTCAGAAAAGTTCGAATCAAAT
TTACAGCAACAGCCTCCTCCTCTGCAGATCAAGAGTGTGCCTACTACTTTGAAAATTGCAGAGCTACCATTACCACCAAC
TGTGGAAAGTAGTCCTGAGCGGCCTATGAACAACAGCCCTGCCCATACAGTAGAGGCAACTTCTGAGACTATCTGTGAGA
TGATCACAGATGTAGTTCCTGAGGTTGAGTCTCCTTCTCAGATGGATGTTGAATTGGTGAGTGGGTCTCCTGTGGCACTC
TCACCCCAGCCTCGATGTGTGAGGTCTGGTTGTGAGAACCCTCCCATTGTGAGTAAGGACTGGGACAACGAATACTGCAG
CAATGAGTGTGTGGTGAAGCACTGCAGGGATGTATTCTTGGCCTGGGTAGCCTCTAGAAATTCAAACACAGTGGTGTTTG
TGAAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 40 .31 RPM
SRP007412_cerebellum 21 .16 RPM
SRP007412_heart 15 .56 RPM
SRP007412_kidney 19 .72 RPM
SRP007412_liver 10 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006261 ortholog_one2one 1 retrogene
retro_amel_858,
Canis familiaris ENSCAFG00000005647 ortholog_one2one 2 retrogenes
retro_cfam_1625, retro_cfam_1698,
Choloepus hoffmanni ENSCHOG00000000714 ortholog_one2one 2 retrogenes
retro_chof_2239, retro_chof_631,
Homo sapiens ENSG00000092203 ortholog_one2one 1 retrogene
retro_hsap_2970,
Macropus eugenii ENSMEUG00000010501 ortholog_one2one 1 retrogene
retro_meug_1384,
Mustela putorius furo ENSMPUG00000000181 ortholog_one2one 1 retrogene
retro_mputfur_718,
Mus musculus ENSMUSG00000016831 ortholog_one2many 1 retrogene
retro_mmus_11,
Nomascus leucogenys ENSNLEG00000014556 ortholog_one2one 1 retrogene
retro_nleu_2027,
Pan troglodytes ENSPTRG00000006126 ortholog_one2one 1 retrogene
retro_ptro_2008,
Sus scrofa ENSSSCG00000029203 ortholog_one2one 1 retrogene
retro_sscr_361,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2463 85.96 100.00
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Download FASTA sequences of all ENSPPYG00000005598 retrocopies