Parental gene:

CCDC53, ENSPPYG00000004878

Aliases:None
Description:coiled-coil domain containing 53 [Source:HGNC Symbol;Acc:24256]
Organism:Orangutan (Pongo abelii)
Coordinates:12:103394607..103446440(-)


>ENSPPYG00000004878
ATGGATGAGGACGGGCTTCCTCTCATGGGGTCAGGCATAGACCTGACCAAGGTGCCAGCTATTCAACAGAAAAGAACGGT
GGCTTTTCTAAACCAATTTGTGGTGCACACTGTACAGTTCCTCAACCGCTTTTCTACAGTTTGTGAGGAGAAACTGGCAG
ACCTTTCGCTTCGTATCCAACAAATTGAAACAACTCTCAATATTTTAGATGCAAAGTTGTCATCTATCCCAGGCCTAGAT
GATGTCACAGTTGAAGTATCTCCTTTAAATGTCACCAGTGTCACAAATGGAGCACATCCTGAAGCCGCTTCAGAGCAACC
ACAGCAGAACAGTACACACGACTCTGGACTACAGGAAAGTGAAGTATCAGCAGAAAATATCTTAACTGTAGCCAAGGATC
CAAGATATGCCAGATATCTCAAAATGGTTCAAGTGGGTGTACCAGTGATGGCAATAAGAAACAAAATGATATCAGAAGGA
CTAGACCCAGATCTTCTTGAGAGGCCAGATGCTCCAGTGCCTGATGGCGAAAGTGAAAAAACTGTAGAAGAAAGTTCAGA
TAGCGAATCTTCTTTTAGTGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 15 .09 RPM
SRP007412_cerebellum 22 .01 RPM
SRP007412_heart 9 .84 RPM
SRP007412_kidney 19 .72 RPM
SRP007412_liver 11 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006329 ortholog_one2one 1 retrogene
retro_amel_791,
Canis familiaris ENSCAFG00000007270 ortholog_one2many 2 retrogenes
retro_cfam_53, retro_cfam_550,
Callithrix jacchus ENSCJAG00000014225 ortholog_one2one 1 retrogene
retro_cjac_4073,
Echinops telfairi ENSETEG00000002254 ortholog_one2one 1 retrogene
retro_etel_1917,
Felis catus ENSFCAG00000019358 ortholog_one2one 1 retrogene
retro_fcat_498,
Homo sapiens ENSG00000120860 ortholog_one2one 1 retrogene
retro_hsap_4696,
Gorilla gorilla ENSGGOG00000014975 ortholog_one2one 1 retrogene
retro_ggor_2922,
Loxodonta africana ENSLAFG00000007850 ortholog_one2one 1 retrogene
retro_lafr_761,
Macropus eugenii ENSMEUG00000004888 ortholog_one2one 3 retrogenes
retro_meug_1441, retro_meug_576, retro_meug_629,
Myotis lucifugus ENSMLUG00000000401 ortholog_one2one 4 retrogenes
retro_mluc_2014, retro_mluc_2015, retro_mluc_2633, retro_mluc_502,
Monodelphis domestica ENSMODG00000002579 ortholog_one2many 1 retrogene
retro_mdom_959,
Mus musculus ENSMUSG00000020056 ortholog_one2one 1 retrogene
retro_mmus_1773,
Nomascus leucogenys ENSNLEG00000006365 ortholog_one2one 1 retrogene
retro_nleu_2366,
Otolemur garnettii ENSOGAG00000003322 ortholog_one2one 2 retrogenes
retro_ogar_3267, retro_ogar_738,
Pan troglodytes ENSPTRG00000005358 ortholog_one2one 1 retrogene
retro_ptro_3121,
Ictidomys tridecemlineatus ENSSTOG00000001870 ortholog_one2one 1 retrogene
retro_itri_970,
Tupaia belangeri ENSTBEG00000008498 ortholog_one2one 3 retrogenes
retro_tbel_1036, retro_tbel_1165, retro_tbel_2967,
Tarsius syrichta ENSTSYG00000000587 ortholog_one2one 4 retrogenes
retro_tsyr_1100, retro_tsyr_265, retro_tsyr_443, retro_tsyr_955,
Tursiops truncatus ENSTTRG00000017221 ortholog_one2one 4 retrogenes
retro_ttru_1569, retro_ttru_1865, retro_ttru_1919, retro_ttru_935,
Vicugna pacos ENSVPAG00000002010 ortholog_one2one 1 retrogene
retro_vpac_446,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3649 75.59 64.95
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Download FASTA sequences of all ENSPPYG00000004878 retrocopies