Parental gene:

CLIC4, ENSPPYG00000001715

Aliases:None
Description:chloride intracellular channel protein 4 [Source:RefSeq peptide;Acc:NP_001124560]
Organism:Orangutan (Pongo abelii)
Coordinates:1:205566664..205663652(-)


>ENSPPYG00000001715
ATGGCGTTGTCGATGCCTCTGAATGGGCTGAAGGAGGAGGACAAAGAGCCCCTCATCGAGCTCTTCGTCAAGGCTGGCAG
TGATGGTGAAAGCATAGGAAACTGCCCCTTTTCCCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTATTTAGTG
TGACGACTGTTGACCTGAAAAGGAAGCCTGCAGACCTGCAGAACTTGGCTCCCGGGACCCACCCACCATTTATAACTTTC
AACAGTGAAGTCAAAACGGATGTAAATAAGATTGAGGAATTTCTTGAAGAAGTCTTATGCCCTCCCAAGTACTTAAAGCT
TTCACCAAAACACCCAGAATCAAATACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCATATATCAAGAATTCAAGGC
CAGAGGCTAATGAAGCACTGGAGAGGGGTCTCCTGAAAACCCTGCAGAAACTGGATGAATATCTGAATTCTCCTCTCCCT
GATGAAATTGATGAAAATAGTATGGAGGACATAAAGTTTTCTACACGTAAATTTCTGGATGGCGATGAAATGACATTAGC
TGATTGCAACCTGCTGCCCAAACTGCATATTGTCAAGGTGGTGGCCAAAAAATATCGCAACTTTGATATTCCAAAAGAAA
TGACTGGCATCTGGAGATACCTAACTAATGCATACAGTAGGGACGAGTTCACCAATACCTGTCCCAGTGATAAGGAGGTT
GAAATAGCATATAGTGATGTAGCCAAAAGACTCACCAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 15 .70 RPM
SRP007412_cerebellum 16 .17 RPM
SRP007412_heart 59 .97 RPM
SRP007412_kidney 161 .33 RPM
SRP007412_liver 34 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007591 ortholog_one2one 10 retrogenes
retro_chof_1284, retro_chof_1401, retro_chof_1446, retro_chof_1654, retro_chof_2177, retro_chof_2673, retro_chof_784, retro_chof_789, retro_chof_808, retro_chof_947,
Callithrix jacchus ENSCJAG00000020833 ortholog_one2one 2 retrogenes
retro_cjac_1713, retro_cjac_461,
Cavia porcellus ENSCPOG00000004010 ortholog_one2one 1 retrogene
retro_cpor_1490,
Homo sapiens ENSG00000169504 ortholog_one2one 2 retrogenes
retro_hsap_4143, retro_hsap_4678,
Gorilla gorilla ENSGGOG00000005586 ortholog_one2one 2 retrogenes
retro_ggor_1579, retro_ggor_2783,
Macropus eugenii ENSMEUG00000008789 ortholog_one2one 1 retrogene
retro_meug_780,
Macaca mulatta ENSMMUG00000002416 ortholog_one2one 2 retrogenes
retro_mmul_1183, retro_mmul_2488,
Mus musculus ENSMUSG00000037242 ortholog_one2one 2 retrogenes
retro_mmus_2259, retro_mmus_945,
Nomascus leucogenys ENSNLEG00000008997 ortholog_one2one 3 retrogenes
retro_nleu_1457, retro_nleu_1785, retro_nleu_2168,
Otolemur garnettii ENSOGAG00000014620 ortholog_one2one 1 retrogene
retro_ogar_2672,
Pongo abelii ENSPPYG00000016456 within_species_paralog 2 retrogenes
retro_pabe_1514, retro_pabe_886,
Pan troglodytes ENSPTRG00000000350 ortholog_one2one 3 retrogenes
retro_ptro_2816, retro_ptro_3107, retro_ptro_396,
Pteropus vampyrus ENSPVAG00000005838 ortholog_one2one 1 retrogene
retro_pvam_812,
Ictidomys tridecemlineatus ENSSTOG00000002184 ortholog_one2many 1 retrogene
retro_itri_52,
Tarsius syrichta ENSTSYG00000008978 ortholog_one2one 1 retrogene
retro_tsyr_252,
Vicugna pacos ENSVPAG00000007699 ortholog_one2one 1 retrogene
retro_vpac_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_219 72.73 86.17
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2. retro_pabe_3466 91.53 69.57
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3. retro_pabe_3632 89.80 100.00
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Download FASTA sequences of all ENSPPYG00000001715 retrocopies