Parental gene:

PRPF38A, ENSPPYG00000001348

Aliases:None
Description:pre-mRNA-splicing factor 38A [Source:RefSeq peptide;Acc:NP_001125092]
Organism:Orangutan (Pongo abelii)
Coordinates:1:177326788..177342826(-)


>ENSPPYG00000001348
ATGGCTAACCGTACAGTGAAGGATGCGGCACAGCATNCCACGGCACCAACCCTCAAATATCTGGTGGAGAAAGATCATTC
GAACGCGAAATCTATGAGTTCCAAGTACTGGAAAGAGGAGTGCTTTGGACTTACGGCTGAACTTGTAGTCGATAAATTGG
AGTTAAGGTTTGTGGGTGGCGTCTATGGGTGGGCAATCATAAAAACCCAACACCCTTTTCTGTGTTTAACCTTGATGCTT
CAAATTCAGCCGGAGGATATCATTGTAGAGTTTATCAAAAATGAAGATTTCAAGTATGTCCGCATGCTGGGGGCACTTTA
CATGAGGCTGACAGGCACTGCAATTGATTGCTACAAGTACTTGGAGCCTTTGTACAATGACTATCGAAAAATCAAGAGCC
AGAACCGAAATGGGGAGTTTGAATTGATGCATGTTGATGAGTTTATTGATGAACTATTGCACAGTGAGAGAGTCTGTGAT
ATCATTCTGCCCCGACTACAGAAACGCTATGTATTAGAGGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGA
GGACATGGATGATGTGGAGTCCAGTGAAGAGGAAGAAGAGGAGGATGAGAAGTTGGAAAGAGTGCCATCACCTGATCACC
GCCGGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGCTACAGAAGGAGTAGGAGCCGGTCTCCC
AGAAGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTCCCCTCGCCGAGAAAGGCATCGGAGCAAGAGTCCAAGACGTCA
CCGCAGCAGGTCCCGAGATCGGCGGCACAGATCCCGTTCCAAGTCACCAGGTCATCACCGTAGTCACAGACACAGGAGCC
ACTCAAAGTCTCCCGAAAGGTCTAAGAAGAGCCACAAGAAGAGCCGGAGAGGGAATGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 28 .03 RPM
SRP007412_cerebellum 70 .04 RPM
SRP007412_heart 17 .55 RPM
SRP007412_kidney 30 .13 RPM
SRP007412_liver 23 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000021594 ortholog_one2one 1 retrogene
retro_cjac_2862,
Dasypus novemcinctus ENSDNOG00000013904 ortholog_one2one 1 retrogene
retro_dnov_443,
Homo sapiens ENSG00000134748 ortholog_one2one 2 retrogenes
retro_hsap_541, retro_hsap_545,
Gorilla gorilla ENSGGOG00000003940 ortholog_one2one 4 retrogenes
retro_ggor_493, retro_ggor_494, retro_ggor_496, retro_ggor_563,
Loxodonta africana ENSLAFG00000025862 ortholog_one2one 1 retrogene
retro_lafr_794,
Myotis lucifugus ENSMLUG00000001053 ortholog_one2one 8 retrogenes
retro_mluc_1105, retro_mluc_1208, retro_mluc_1856, retro_mluc_2016, retro_mluc_2150, retro_mluc_2405, retro_mluc_2576, retro_mluc_828,
Monodelphis domestica ENSMODG00000000644 ortholog_one2many 1 retrogene
retro_mdom_184,
Mus musculus ENSMUSG00000063800 ortholog_one2one 2 retrogenes
retro_mmus_1227, retro_mmus_671,
Nomascus leucogenys ENSNLEG00000017999 ortholog_one2one 2 retrogenes
retro_nleu_715, retro_nleu_719,
Oryctolagus cuniculus ENSOCUG00000000963 ortholog_one2one 1 retrogene
retro_ocun_713,
Otolemur garnettii ENSOGAG00000005423 ortholog_one2one 1 retrogene
retro_ogar_3216,
Petromyzon marinus ENSPMAG00000005561 ortholog_one2one 1 retrogene
retro_pmar_28,
Pan troglodytes ENSPTRG00000000739 ortholog_one2one 2 retrogenes
retro_ptro_406, retro_ptro_410,
Pteropus vampyrus ENSPVAG00000009803 ortholog_one2one 1 retrogene
retro_pvam_967,
Sus scrofa ENSSSCG00000003858 ortholog_one2one 1 retrogene
retro_sscr_924,
Ictidomys tridecemlineatus ENSSTOG00000015610 ortholog_one2many 1 retrogene
retro_itri_1564,
Taeniopygia guttata ENSTGUG00000008995 ortholog_one2one 3 retrogenes
retro_tgut_12, retro_tgut_13, retro_tgut_14,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_500 77.89 95.21
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2. retro_pabe_503 73.17 77.32
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Download FASTA sequences of all ENSPPYG00000001348 retrocopies