Parental gene:

RPL27A, ENSOPRG00000004717

Aliases:None
Description:ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_3747:192029..193962(+)


>ENSOPRG00000004717
ATGCCATCCAGACTGAGGAAGACGCGGAAACTGCGCGGCCACGTGAGCCATGGCCACGGCCGCATCGGCAAGCACCGGAA
GCACCCGGGAGGCCGTGGGAACGCTGGTGGCATGCATCACCACAGGATCAACTTCGACAAATATCACCCAGGTTACTTTG
GGAAAGTTGGTATGAGACATTACCACTTAAAGCGGAACCAGAGCTTCTGCCCAACTGTCAACCTGGATAAGCTGTGGACG
CTGGTCAGTGAGCAGACCCGGGTGAATGCTGCCAAGAACAAGACAGGAGCAGCTCCCATCATCGACGTTGTGCGGTCGGG
CTACTACAAAGTTCTGGGAAAAGGAAAACTCCCAAAGCTCCCAGTCATTGTCAAAGCCAAATTCTTCAGTAGAAGAGCTG
AGGAGAAGATTAAGGGCGTTGGGGGAGCCTGTGTCCTGGTGGCTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 possible_ortholog 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 possible_ortholog 1 retrogene
retro_cjac_211,
Myotis lucifugus ENSMLUG00000016616 possible_ortholog 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Oryctolagus cuniculus ENSOCUG00000005442 possible_ortholog 1 retrogene
retro_ocun_12,
Rattus norvegicus ENSRNOG00000014214 possible_ortholog 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Vicugna pacos ENSVPAG00000011227 ortholog_one2one 7 retrogenes
retro_vpac_200, retro_vpac_272, retro_vpac_286, retro_vpac_426, retro_vpac_508, retro_vpac_581, retro_vpac_99,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_131 93.81 65.54
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2. retro_opri_203 81.76 100.00
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3. retro_opri_255 83.78 100.00
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4. retro_opri_304 66.42 91.22
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5. retro_opri_570 83.78 100.00
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6. retro_opri_769 93.81 65.54
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7. retro_opri_798 81.76 100.00
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8. retro_opri_836 71.00 66.89
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9. retro_opri_990 73.42 52.03
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10. retro_opri_1080 81.33 100.00
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11. retro_opri_1214 66.42 91.22
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Download FASTA sequences of all ENSOPRG00000004717 retrocopies