Parental gene:

PDLIM1, ENSOCUG00000013643

Aliases:None
Description:PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:2067]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:18:43944161..44010361(-)


>ENSOCUG00000013643
ATGAGCACCCAGCAGATAGTCCTCCAGGGCCCGGGACCATGGGGCTTCCGCCTCGTGGGCGGCAAGGACTTCGAGCAGCC
CCTCGCCGTTTCTCGGGTTACTCCCGGAAGCAAGGCTGCTTTAGCTAATTTATGTATTGGAGACGTAATCACAGCCATCG
ATGGGGAAAATACTAGCAGTATGACACATTTGGAAGCTCAGAACAAAATCAAGGGCTGCACGGACAACATTACTCTCACC
ATAGCAAGATCTGAACATAAAATCTGGTCTCCTCTGGTGACGGAAGAGGGGAAACGTCACCCGTACAAGATGAATTTAGC
CTCGGAACCCCAGGAGGTCCTGCACATAGGAAGCGCACACAACCGAAGCGCCATGCCCTTTACCGCCTCGCCTGCCTCAG
TCACTGCCCCCAGGGTCATCACGAACCAGTACAACAACCCGGTCGGCCTCTACTCTTCGGAGAACATCTCCACCTTCAAC
AGTGCCTTGGAGGCAAGGACTGCCACCAGTGGGGAGGAGGCCAACAGCAGACCCTTAGAGCATTCGCAGCCTCCAGGCGG
CCTCGTCATCGACAAGGAATCTGAAGTTTACAAGATGCTGCAGGAGAAGCAGGAGTTGAATGAGCCCCCGAAGCAGTCCA
CATCATTCCGGGTCCTGCAGGAAATCCTGGAGTCCGAGGAGAAAGGGGATCCCAACAAACCCTCTGGATTCAGAAGTGTT
AAAGCTCCTGTCACCAAAGTGGCTGCATCAATCGGAAATGCTGCTCAGAAGTTGCCCATGTGTGACAAATGTGGCACTGG
CATTGTAGGCGTGTTTGTGAAGCTGCGAGACCGCCACCGCCACCCTGAGTGTTACGTGTGCTCCGACTGTGGCACCAACC
TGAAGCAGAAGGGCCACTTCTTTGTGGAGGATCAAATCTACTGTGAAAAGCACGCCCGGGAGCGGGTCACGCCACCCGAG
GGCTACGACGTGGTCACCGTCTTTCCCAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 1 .71 RPM
SRP017611_kidney 13 .78 RPM
SRP017611_liver 14 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011182 ortholog_one2one 1 retrogene
retro_btau_690,
Canis familiaris ENSCAFG00000028553 ortholog_one2one 1 retrogene
retro_cfam_2080,
Dasypus novemcinctus ENSDNOG00000012381 ortholog_one2one 1 retrogene
retro_dnov_1119,
Homo sapiens ENSG00000107438 ortholog_one2one 2 retrogenes
retro_hsap_1815, retro_hsap_2681,
Macaca mulatta ENSMMUG00000000454 ortholog_one2many 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Mus musculus ENSMUSG00000055044 ortholog_one2one 2 retrogenes
retro_mmus_2558, retro_mmus_779,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Pan troglodytes ENSPTRG00000002783 ortholog_one2one 1 retrogene
retro_ptro_912,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_417 86.23 100.00
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Download FASTA sequences of all ENSOCUG00000013643 retrocopies