Parental gene:

PDLIM1, ENSBTAG00000011182

Aliases:None
Description:PDZ and LIM domain protein 1 [Source:RefSeq peptide;Acc:NP_001030532]
Organism:Cow (Bos taurus)
Coordinates:26:16605967..16646619(-)


>ENSBTAG00000011182
ATGACCACCCTGCAAATAGTCCTGCAGGGCCCGGGACCCTGGGGCTTCCGCCTCGTGGGGGGCAAGGACTTCGAGCAGCC
TCTCGCCATTTCCCGGGTCACTCCCGGAAGCAAGGCTGCTATAGGTAATTTATGTGTTGGAGATGTAATCACAGCCATCG
ATGGGGAAAATACCAGCAATATGACACACTTGGAAGCTCAGAACAAAATCAAAGGCTGCACGGACAACATGACTCTCACA
GTAGCCAGATCTGAACAGAAAATCTGGTCTCCTCTGGTGACAGAGGAAGGGAAACGTCACCCATACAAGATGAATTTAGC
CTCTGAACCCCAAGAGGCCCTCCACATAGGAAGCGCCCACAACCGGAGTGCCGTGCCCTTTACTGCCTCACCCGCCTCCA
GCTCTGCCCCCAGGGTCATCACAAACCAGTACAACAACCCAGCTGGCCTCTACTCCTCTGAAAATATCTCCAGCTTCAAC
AACGCCTTGGAGTCAAAGACAGCAGCCAGTGGGCAGGAGAACGGCAGAGCCTTAGACCATTCTCAGCTTCCAAGCGGACT
CGTCATCGATAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTAAATGAGCCTCCGAAACAGTCCACTT
CATTCCTGGTTTTGCAGGAAATTCTGGAGTCTGAGGAGAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTTAAG
GCTCCAGTCACCAAAGTGGCTGCTTCAATTGGAAATGCCCAGAAGCTGCCCATGTGTGACAAATGTGGCACTGGCATTGT
CGGCGTGTTCGTGAAGCTGCGGGAACGTCACCGCCACCCCGAGTGTTACGTGTGCACCGACTGTGGCACCAACCTGAAAC
AGAAGGGCCATTTCTTTGTGGAGGATCAGATCTACTGTGAAAAGCATGCCCGGGAACGGGTCACTCCACCTGAGGGCTAT
GACGTGATCACAGTGTTCCCCAAGTGA

Library Parental gene expression (RPM)
ERP005899_liver 17 .45 RPM
ERP005899_muscle 120 .57 RPM
SRP017611_brain 0 .87 RPM
SRP017611_kidney 20 .80 RPM
SRP017611_liver 28 .84 RPM
SRP030211_testis 5 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000028553 ortholog_one2one 1 retrogene
retro_cfam_2080,
Dasypus novemcinctus ENSDNOG00000012381 ortholog_one2one 1 retrogene
retro_dnov_1119,
Homo sapiens ENSG00000107438 ortholog_one2one 2 retrogenes
retro_hsap_1815, retro_hsap_2681,
Macaca mulatta ENSMMUG00000000454 ortholog_one2many 2 retrogenes
retro_mmul_1250, retro_mmul_1419,
Mus musculus ENSMUSG00000055044 ortholog_one2one 2 retrogenes
retro_mmus_2558, retro_mmus_779,
Nomascus leucogenys ENSNLEG00000013055 ortholog_one2one 3 retrogenes
retro_nleu_1819, retro_nleu_2767, retro_nleu_2970,
Oryctolagus cuniculus ENSOCUG00000013643 ortholog_one2one 1 retrogene
retro_ocun_417,
Pongo abelii ENSPPYG00000002507 ortholog_one2one 2 retrogenes
retro_pabe_1109, retro_pabe_1485,
Pan troglodytes ENSPTRG00000002783 ortholog_one2one 1 retrogene
retro_ptro_912,
Tarsius syrichta ENSTSYG00000000834 ortholog_one2one 2 retrogenes
retro_tsyr_1056, retro_tsyr_1224,
Tursiops truncatus ENSTTRG00000012118 ortholog_one2one 2 retrogenes
retro_ttru_1777, retro_ttru_976,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_690 73.09 91.16
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Download FASTA sequences of all ENSBTAG00000011182 retrocopies