Parental gene:

PRIM1, ENSOCUG00000003458

Aliases:None
Description:primase, DNA, polypeptide 1 (49kDa) [Source:HGNC Symbol;Acc:9369]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018714:9145..33266(-)


>ENSOCUG00000003458
ATGGAGTCGTTTGACCCAGCCGAGCTGCCCGAGCTGCTTAAGCTTTATTACCGGAGGCTGTTCCCCTACGCGCAGTATTA
CCGCTGGCTCAACTATGGCGGAGTGGTAAAGAATTACTTCCAGCACCGTGAATTTTCGTTCACTTTGAAAGATGATATTT
ACATTCGCTACCAGTCCTTCAACAACCAGAATGACCTGGAAAAGGAGATGCAGAAAATGAACCCATACAAGATTGATATA
GGCGCAGTGTATTCCCACAGACCCAGTCAACACAGTACCGTGAAGCTGGGCGCTTTCCAGGCTCAGGAGAAAGAGCTGGT
GTTCGACATCGACATGACTGACTACGACGACGTGAGGCGATGTTGTAGTTCCGCAGACATTTGTTCCAAGTGCTGGACCC
TCATGACCATGGCCATACTCATCATCGACCGAGCGTTGAAGGAGGACTTTGGATTTAAGCATCGTCTCTGGGTGTATTCT
GGAAGGAGAGGTGTTCATTGTTGGGTCTGCGATGAATCGGTTAGGAAATTGTCCTCCGCAGTGCGTTCTGGAATAGTTGA
GTATTTGAGTCTTGTAAAGGGCGGTCAAGACGTTAAGAAGAAAGTTCACCTAAATGAAAAAGTTCACCCTTTTGTCAGAA
GATCCATAAACATAATTAAAAAATACTTTGAAGAATATGCCTTGGTTGGTCAAGATATTCTTGAAAATAAAGAAAGCTGG
GATAAGATATTAGCCCTTGTTCCTGAAGCAATTCATGCTGATCTTCAACAAGGCTTCCAGAAGTGTCACAGCTCTCTTCA
GCGTTGGGAGCACCTGAAGAAAACAATAGCCAAACATCAGAATAACACCAAAAACGACAAATGTGCACCCTGGCTGGAGT
GGGAGATTATGCTGCAGTACTGTTTTCCACGGCTGGATATCAATGTTAGCAAAGGAATCAATCATTTACTGAAGAGCCCT
TTCAGTGTGCATCCTAAAACAGGTCGCATTTCTGTGCCCATTAATTTACAGAAAGTGGACCAGTTTGATCCGTTTACTGT
TCCAACCATAAGCTCCATCTGCCGTGAGTTAGATGCCATTTCCAACAATGAAGAGGAAAAAGAGGAGAATGAAGCTGAAT
CAGATATCAAACGTAGAACCAGAGATTATAAGAAGACCAGTCTGGCACCTTATGTCAAAGTTTTTGAACAGTTTCTTGAA
AACCTCGATAAATCCCGAAAAGGAGAACTCCTCAAGAAGAGTGATTTACAAAAAGATTTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 7 .51 RPM
SRP017611_kidney 2 .43 RPM
SRP017611_liver 0 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000015297 ortholog_one2many 1 retrogene
retro_ecab_447,
Homo sapiens ENSG00000198056 ortholog_one2one 1 retrogene
retro_hsap_339,
Mustela putorius furo ENSMPUG00000001603 ortholog_one2one 1 retrogene
retro_mputfur_587,
Nomascus leucogenys ENSNLEG00000017443 ortholog_one2one 1 retrogene
retro_nleu_1780,
Procavia capensis ENSPCAG00000007103 ortholog_one2one 1 retrogene
retro_pcap_174,
Pongo abelii ENSPPYG00000004672 ortholog_one2one 1 retrogene
retro_pabe_356,
Pan troglodytes ENSPTRG00000022987 ortholog_one2one 1 retrogene
retro_ptro_271,
Pteropus vampyrus ENSPVAG00000008017 ortholog_one2one 2 retrogenes
retro_pvam_153, retro_pvam_703,
Sus scrofa ENSSSCG00000000408 ortholog_one2many 1 retrogene
retro_sscr_499,
Tupaia belangeri ENSTBEG00000012998 ortholog_one2one 1 retrogene
retro_tbel_2255,
Tursiops truncatus ENSTTRG00000002153 ortholog_one2one 1 retrogene
retro_ttru_352,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_1265 99.11 80.24
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Download FASTA sequences of all ENSOCUG00000003458 retrocopies