Parental gene:

ARL1, ENSOCUG00000002217

Aliases:None
Description:ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:4:80734815..80743668(-)


>ENSOCUG00000002217
GCGAGTACTGACAGGCGGTTCATCATGGGTGGCTTTTTCTCAAGTATTTTTTCCAGTCTTTTTGGAACCCGGGAAATGAG
GATTTTAATTTTGGGACTAGATGGAGCAGGAAAAACCACAATTTTGTATAGATTACAGGTTGGAGAAGTCGTTACCACTA
TTCCTACCATCGGATTTAATGTAGAGACAGTGACGTACAAAAACCTTAAATTCCAAGTCTGGGATTTAGGAGGACAGACA
AGTATCAGGCCATACTGGAGATGTTACTATTCAAACACAGATGCAGTCATTTATGTAGTGGACAGTTGTGACCGAGACCG
AATTGGAATTTCCAAATCAGAATTAGTTGCTATGTTGGAGGAAGAAGAGCTGAGAAAAGCCATTTTAGTGGTGTTTGCAA
ATAAGCAGGACATGGAGCAGGCCATGACTCCCTCAGAGATGGCAAATTCACTTGGGTTACCTGCCTTAAAGGATCGAAAG
TGGCAGATATTCAAAACGTCAGCAACCAAAGGCACTGGCCTGGATGAGGCCATGGAATGGTTAGTTGAAACATTAAAAAG
CAGACAG

Library Parental gene expression (RPM)
SRP017611_brain 29 .08 RPM
SRP017611_kidney 28 .99 RPM
SRP017611_liver 6 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016452 ortholog_one2one 2 retrogenes
retro_amel_1138, retro_amel_713,
Canis familiaris ENSCAFG00000006992 ortholog_one2one 2 retrogenes
retro_cfam_1176, retro_cfam_709,
Callithrix jacchus ENSCJAG00000001966 ortholog_one2one 1 retrogene
retro_cjac_2938,
Echinops telfairi ENSETEG00000020310 ortholog_one2one 1 retrogene
retro_etel_1850,
Macropus eugenii ENSMEUG00000015525 ortholog_one2one 1 retrogene
retro_meug_518,
Myotis lucifugus ENSMLUG00000002351 ortholog_one2many 1 retrogene
retro_mluc_255,
Monodelphis domestica ENSMODG00000003056 ortholog_one2one 1 retrogene
retro_mdom_677,
Mustela putorius furo ENSMPUG00000011822 ortholog_one2one 1 retrogene
retro_mputfur_1458,
Mus musculus ENSMUSG00000060904 ortholog_one2one 1 retrogene
retro_mmus_3285,
Oryctolagus cuniculus ENSOCUG00000014876 within_species_paralog 1 retrogene
retro_ocun_79,
Oryctolagus cuniculus ENSOCUG00000029293 within_species_paralog 1 retrogene
retro_ocun_611,
Otolemur garnettii ENSOGAG00000015144 ortholog_one2one 1 retrogene
retro_ogar_1239,
Pteropus vampyrus ENSPVAG00000008119 ortholog_one2one 2 retrogenes
retro_pvam_1072, retro_pvam_715,
Rattus norvegicus ENSRNOG00000005763 ortholog_one2one 1 retrogene
retro_rnor_2375,
Sorex araneus ENSSARG00000013944 ortholog_one2one 4 retrogenes
retro_sara_237, retro_sara_304, retro_sara_479, retro_sara_71,
Sarcophilus harrisii ENSSHAG00000004634 ortholog_one2one 2 retrogenes
retro_shar_204, retro_shar_275,
Ictidomys tridecemlineatus ENSSTOG00000016022 ortholog_one2one 2 retrogenes
retro_itri_1000, retro_itri_348,
Tarsius syrichta ENSTSYG00000013257 ortholog_one2one 5 retrogenes
retro_tsyr_1803, retro_tsyr_188, retro_tsyr_350, retro_tsyr_369, retro_tsyr_809,
Tursiops truncatus ENSTTRG00000017202 ortholog_one2one 1 retrogene
retro_ttru_701,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_399 58.18 55.56
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2. retro_ocun_400 67.32 79.37
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3. retro_ocun_465 84.03 62.43
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4. retro_ocun_847 90.05 100.00
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5. retro_ocun_1608 55.56 79.37
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Download FASTA sequences of all ENSOCUG00000002217 retrocopies