Parental gene:

RPL13A, ENSNLEG00000005211

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397326.1:1424301..1426169(+)


>ENSNLEG00000005211
TGTCTCCCACAGGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACT
GCTGGGCCGGAAGGTGGTGGTCGTACGCTGCGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACC
TGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTCTGG
CGGACCGTGCGAGGTATGCTGCCCCACAAGACCAAGCGAGGCCAGGCCGCTCTGGACCGCCTCAAGGTGTTTGACGGCAT
CCCACCGCCCTACGACAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTTGTGCGTCTGAAGCCTACAAGATTTGCCTATC
TGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGGAAAGAGAAAGCC
AAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAATGTGGAGAAGAAAATTGACAA
ATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005296 possible_ortholog 3 retrogenes
retro_btau_1251, retro_btau_719, retro_btau_789,
Callithrix jacchus ENSCJAG00000000072 possible_ortholog 16 retrogenes
retro_cjac_1130, retro_cjac_1706, retro_cjac_182, retro_cjac_197, retro_cjac_1997, retro_cjac_2170, retro_cjac_2322, retro_cjac_2467, retro_cjac_2468, retro_cjac_2665, retro_cjac_2699, retro_cjac_2755, retro_cjac_3009, retro_cjac_664, retro_cjac_941, retro_cjac_972,
Echinops telfairi ENSETEG00000017076 possible_ortholog 2 retrogenes
retro_etel_46, retro_etel_853,
Loxodonta africana ENSLAFG00000016213 ortholog_one2one 3 retrogenes
retro_lafr_1160, retro_lafr_576, retro_lafr_810,
Microcebus murinus ENSMICG00000009318 ortholog_one2one 6 retrogenes
retro_mmur_240, retro_mmur_283, retro_mmur_311, retro_mmur_359, retro_mmur_65, retro_mmur_736,
Macaca mulatta ENSMMUG00000007551 ortholog_one2one 14 retrogenes
retro_mmul_1100, retro_mmul_1256, retro_mmul_1638, retro_mmul_1756, retro_mmul_2179, retro_mmul_2249, retro_mmul_2352, retro_mmul_2399, retro_mmul_296, retro_mmul_500, retro_mmul_520, retro_mmul_547, retro_mmul_837, retro_mmul_924,
Mus musculus ENSMUSG00000074129 possible_ortholog 3 retrogenes
retro_mmus_1129, retro_mmus_1334, retro_mmus_20,
Otolemur garnettii ENSOGAG00000004625 ortholog_one2many 7 retrogenes
retro_ogar_1496, retro_ogar_211, retro_ogar_2254, retro_ogar_3148, retro_ogar_54, retro_ogar_596, retro_ogar_612,
Pongo abelii ENSPPYG00000010251 possible_ortholog 1 retrogene
retro_pabe_148,
Pan troglodytes ENSPTRG00000011298 ortholog_one2one 1 retrogene
retro_ptro_31,
Pteropus vampyrus ENSPVAG00000010958 ortholog_one2one 3 retrogenes
retro_pvam_129, retro_pvam_625, retro_pvam_771,
Rattus norvegicus ENSRNOG00000020618 possible_ortholog 10 retrogenes
retro_rnor_1073, retro_rnor_1112, retro_rnor_1212, retro_rnor_1292, retro_rnor_1357, retro_rnor_1742, retro_rnor_564, retro_rnor_593, retro_rnor_665, retro_rnor_988,
Sus scrofa ENSSSCG00000003166 possible_ortholog 4 retrogenes
retro_sscr_290, retro_sscr_300, retro_sscr_392, retro_sscr_743,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_159 89.71 86.43
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2. retro_nleu_228 72.32 54.27
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3. retro_nleu_330 67.24 84.92
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4. retro_nleu_392 86.76 66.83
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5. retro_nleu_441 94.00 98.49
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6. retro_nleu_475 90.24 80.40
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7. retro_nleu_513 56.90 56.28
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8. retro_nleu_744 95.48 98.49
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9. retro_nleu_760 69.37 54.27
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10. retro_nleu_1173 90.50 98.49
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11. retro_nleu_1429 82.18 98.49
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12. retro_nleu_1568 76.29 95.48
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13. retro_nleu_1823 88.06 98.49
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14. retro_nleu_1873 64.60 54.77
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15. retro_nleu_1892 78.95 56.28
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16. retro_nleu_1897 79.82 53.27
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17. retro_nleu_2047 87.44 98.49
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18. retro_nleu_2398 85.57 98.49
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19. retro_nleu_2415 65.73 87.44
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20. retro_nleu_2463 78.22 98.49
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21. retro_nleu_2614 93.71 86.43
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22. retro_nleu_2789 95.45 64.82
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23. retro_nleu_2928 94.42 97.49
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Download FASTA sequences of all ENSNLEG00000005211 retrocopies